Link type | Probability | Chain C piercings | Chain E piercings | Chain F piercings | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E | |||||||||||
view details | Unlink | 22% | +189C -227C -50E -76E +86E +228E |
Chain C Sequence |
MEFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDRERLECFE |
Chain C Sequence |
MEFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDRERLECFE |
Chain C Sequence |
MEFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDRERLECFE |
sequence length | 227,227,227 |
structure length | 227,227,227 |
publication title |
A dramatic conformational rearrangement is necessary for the activation of DNR from Pseudomonas aeruginosa. Crystal structure of wild-type DNR.
pubmed doi rcsb |
molecule tags | Transcription regulator |
molecule keywords | DNR protein |
source organism | Pseudomonas aeruginosa |
pdb deposition date | 2008-06-26 |
LinkProt deposition date | 2016-08-17 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
CEF | PF00027 | cNMP_binding | Cyclic nucleotide-binding domain |
CEF | PF13545 | HTH_Crp_2 | Crp-like helix-turn-helix domain |
CEF | PF00027 | cNMP_binding | Cyclic nucleotide-binding domain |
CEF | PF13545 | HTH_Crp_2 | Crp-like helix-turn-helix domain |
CEF | PF00027 | cNMP_binding | Cyclic nucleotide-binding domain |
CEF | PF13545 | HTH_Crp_2 | Crp-like helix-turn-helix domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | "winged helix" repressor DNA binding domain | ||
Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | ||
Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | "winged helix" repressor DNA binding domain | ||
Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | ||
Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | "winged helix" repressor DNA binding domain | ||
Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls |
#chains in the LinkProt database with same CATH superfamily 1XCB CEG; 3DKW EIJ; 1XCB ACEF; 1XCB ADEF; 3DKW BIJ; 3DKW EFH; 3DKW CDE; 1XCB ABEF; 3DKW EG; 3DKW EHJ; 1XCB BCDG; 1XCB ABDF; 3DKW CE; 3DKW DI; 1XCB ABF; 1XCB DE; 1XCB CDEG; 3DKW DGH; 3DKW BEH; 1XCB CDE; 1XCB ACFG; 1XCB ABDE; 3DKW ABD; 1XCB BDEG; 1XCB AEFG; 1XCB AB; 1XCB DF; 3DKW AIJ; 1XCB AEF; 1XCB BE; 3EO6 AB; 1XCB ACDG; 3DKW BDI; 1XCB BEG; 1XCB ACE; 1XCB EF; 1XCB CEFG; 1XCB BCE; 1XCB BCEG; 3DKW CIJ; 1XCB CEF; 3DKW CDJ; 3DKW BD; 1XCB ADEG; 3DKW BI; 3DKW FIJ; 3DKW GHJ; 1XCB ABCG; 3DKW BCD; 3DKW FGH; 3DKW CEH; 3DKW CDI; 3DKW AGH; 3DKW BC; 1XCB ABEG; 3DKW EH; 3DKW GH; 3DKW GHI; 3DKW CEF; 1XCB CE; 3DKW DIJ; 3DKW FH; 1XCB AF; 1XCB DEF; 1XCB CDF; 3DKW EHI; 3DKW CH; 1XCB BCDE; 3DKW HIJ; 3DKW ABC; 3DKW ABG; 1XCB BDEF; 1XCB AFG; 1XCB AE; 1XCB ABFG; 3DKW DEF; 3DKW ABJ; 1XCB BEFG; 1XCB ACDE; 3DKW EFJ; 3DKW DEH; 3DKW EFG; 1XCB ACG; 3DKW ABI; 3DKW CDG; 3DKW CEI; 1XCB ADFG; 3DKW CGH; 3DKW CDH; 3DKW CFI; 1XCB ACEG; 3DKW EGH; 3DKW EFI; 3DKW AEF; 3ES4 AB; 1XCB ABCE; 3DKW AB; 1XCB CDFG; 1XCB CD; 1XCB ABG; 3DKW EF; 1XCB CDG; 3DKW CI; 1XCB BDE; 3DKW CD; 2DI3 AB; 3DKW ABF; 1XCB CG; 3DKW IJ; 1XCB ABE; 1XCB CDEF; 1XCB BG; 3DKW BGH; 3DKW CJ; 3DKW BEF; 1XCB ADE; 3DKW ACD; 3DKW AEH; 1XCB BCG; 3DKW ABE; 3DKW CHI; 1XCB AEG; 1XCB AG; 1XCB ACDF; 3DKW BDH; 1XCB BEF; 3DKW HI; 1XCB ADF; 3DKW ACI; 3DKW ABH; 3DKW CDF; 1XCB BCEF; #chains in the LinkProt database with same CATH topology 2GSY FJNP; 2GSY HIL; 1XCB CEG; 2GSY KNOP; 2GSY JKQS; 2GSY HLR; 3DKW FIJ; 2GSY EKP; 1XCB ACEF; 1XCB ADEF; 2GSY JOP; 2GSY MNRT; 3DKW BIJ; 2GSY CHLN; 3DKW EFH; 2GSY GHM; 2GSY ABQ; 2GSY INS; 2GSY FHIK; 2GSY GR; 2GSY FGLN; 2GSY EFHN; 3DKW CDE; 2GSY GHMT; 2GSY FGIR; 2GSY DJOP; 2GSY EIKO; 1XCB ABEF; 3DKW EG; 3DKW EIJ; 3DKW EHJ; 2GSY GIPQ; 2GSY ABD; 1XCB BCDG; 1XCB ABDF; 2GSY GIL; 2GSY CEKO; 3DKW CE; 2GSY FGIL; 2GSY FHIL; 2GSY GKLN; 1F2N ABC; 2GSY CDLO; 2GSY CEOQ; 2GSY HIS; 3DKW DI; 1XCB ABF; 1XCB DE; 1XCB CDEG; 3DKW DGH; 2GSY HLMT; 2GSY CIOP; 2GSY GIS; 3DKW BEH; 2GSY CHLR; 1XCB CDE; 1XCB ACFG; 2GSY EKOQ; 2GSY FLNP; 1XCB ABDE; 2GSY GI; 2GSY EOP; 2GSY CKOS; 3DKW ABD; 2GSY EIKQ; 1XCB BDEG; 1XCB AEFG; 2GSY HLMN; 1XCB AB; 1XCB DF; 3DKW AIJ; 1XCB AEF; 2GSY FJP; 1XCB BE; 2GSY FKPS; 2GSY DJP; 2GSY GHIL; 3EO6 AB; 1XCB ACDG; 3DKW BDI; 2GSY AJOQ; 1XCB BEG; 2GSY FLNS; 2GSY ABE; 1XCB ACE; 1XCB EF; 1XCB CEFG; 2GSY DJKO; 2GSY FHIR; 1XCB BCE; 2GSY CDLN; 1XCB BCEG; 2GSY GIST; 3DKW CIJ; 1XCB CEF; 2GSY KNOS; 3DKW CDJ; 3DKW BD; 2GSY LN; 2GSY EKQ; 2GSY GHN; 1XCB ADEG; 3DKW BI; 1AU7 AB; 2GSY GHIK; 2GSY GIR; 3DKW GHJ; 2GSY FJKO; 2GSY INR; 2GSY FKOQ; 1XCB ABCG; 3DKW BCD; 2GSY MRST; 2GSY FKNP; 3DKW FGH; 2GSY EKPQ; 2GSY EIKP; 3DKW CEH; 2GSY HIM; 2GSY HIN; 3DKW CDI; 3DKW AGH; 3DKW BC; 1XCB ABEG; 3DKW EH; 3DKW GH; 2GSY KOQ; 2GSY FIK; 2GSY CHLM; 3DKW GHI; 2GSY GHMN; 2GSY FHIM; 2GSY GIP; 1F2N AC; 3DKW CEF; 2GSY GMRT; 1XCB CE; 3DKW DIJ; 2GSY GHIM; 3DKW FH; 2GSY KOP; 1XCB AF; 2GSY FGIP; 2GSY FNST; 2GSY MR; 2GSY CJKO; 2GSY IMST; 2GSY CGHL; 1XCB DEF; 2GSY EJPQ; 1XCB CDF; 2GSY INRS; 3DKW EHI; 2GSY KOQS; 3DKW CH; 1XCB BCDE; 2GSY EOQ; 3DKW HIJ; 3DKW ABC; 2GSY FHNP; 2GSY FHIN; 2GSY GHR; 3DKW ABG; 2GSY KPQ; 1XCB BDEF; 2GSY EHIP; 1XCB AFG; 1XCB AE; 2GSY GLR; 2GSY HLMR; 2GSY EFST; 2GSY EKOS; 2GSY EFHI; 2GSY FLNR; 2GSY DJQ; 1XCB ABFG; 3DKW DEF; 2GSY FHNS; 2GSY FHIS; 3DKW ABJ; 2GSY HLN; 2GSY KQST; 2GSY GLMR; 2GSY CKOP; 2GSY CJOQ; 2GSY KNOR; 2GSY KOST; 2GSY ABOQ; 2GSY CJOP; 2GSY DEJP; 2GSY FNS; 2GSY AEFK; 1XCB BEFG; 2GSY CLOP; 1XCB ACDE; 3DKW EFJ; 3B9I AB; 3DKW DEH; 3DKW EFG; 2GSY EJKP; 1XCB ACG; 2GSY GHIP; 2GSY IKQS; 2GSY FKNQ; 2GSY FNR; 3DKW ABI; 3DKW CDG; 3DKW CEI; 2GSY EFLN; 1XCB ADFG; 3DKW CGH; 3DKW CDH; 2GSY EFQS; 2GSY AIPQ; 3DKW CFI; 2GSY FP; 1XCB ACEG; 2GSY FGIK; 3DKW EGH; 2GSY ABPQ; 2GSY FJKQ; 3DKW EFI; 2GSY GN; 2GSY KPST; 3DKW AEF; 3ES4 AB; 1XCB ABCE; 3DKW AB; 1XCB CDFG; 2GSY FKST; 1XCB CD; 2GSY GHL; 2GSY EKPS; 2GSY KNST; 2GSY FGIS; 2GSY HIP; 2GSY GIN; 2GSY DJOQ; 1F2N BC; 1XCB ABG; 2GSY KPS; 2GSY FS; 3DKW EF; 1XCB CDG; 2GSY KOS; 2GSY CJKQ; 3DKW CI; 2GSY GHI; 2GSY CHLO; 2GSY GIK; 1XCB BDE; 2GSY AKQ; 3DKW CD; 2GSY DFJP; 2GSY AEFO; 2DI3 AB; 3DKW ABF; 1F2N AB; 2GSY CEOP; 1XCB CG; 3DKW IJ; 1XCB ABE; 1XCB CDEF; 2GSY CILN; 2GSY FI; 1XCB BG; 2GSY HIK; 3DKW BGH; 2GSY GHIN; 2GSY GLN; 2GSY FNP; 1QEX AB; 2GSY ST; 2GSY EKOP; 3DKW CJ; 3DKW BEF; 2GSY CDGL; 1XCB ADE; 2GSY GH; 3DKW ACD; 2GSY HKLN; 3DKW AEH; 2GSY FHNR; 2GSY FHIP; 1XCB BCG; 3DKW ABE; 2GSY GHMR; 2GSY FIKS; 2GSY CKOQ; 2GSY FKPQ; 3DKW CHI; 2GSY DEJQ; 1XCB AEG; 2QDN AB; 2GSY HLM; 2GSY FGIN; 1XCB AG; 1XCB ACDF; 2GSY FJKP; 3DKW BDH; 2GSY GHIR; 1XCB BEF; 3DKW HI; 2GSY INP; 1XCB ADF; 2GSY FIP; 2GSY GHIS; 3DKW ACI; 2GSY IJNP; 2GSY HIR; 2GSY ACEO; 2GSY GIPS; 3DKW ABH; 2GSY DEJO; 3DKW CDF; 1XCB BCEF; #chains in the LinkProt database with same CATH homology 2GSY FJNP; 2GSY HIL; 1XCB CEG; 2GSY KNOP; 2GSY JKQS; 2GSY HLR; 3DKW EIJ; 2GSY EKP; 1XCB ACEF; 1XCB ADEF; 2GSY JOP; 2GSY MNRT; 3DKW BIJ; 2GSY CHLN; 3DKW EFH; 2GSY GHM; 2GSY ABQ; 2GSY INS; 2GSY FHIK; 2GSY GR; 2GSY FGLN; 2GSY EFHN; 3DKW CDE; 2GSY GHMT; 2GSY FGIR; 2GSY DJOP; 2GSY EIKO; 1XCB ABEF; 3DKW EG; 3DKW EHJ; 2GSY GIPQ; 2GSY ABD; 1XCB BCDG; 1XCB ABDF; 2GSY GIL; 2GSY CEKO; 3DKW CE; 2GSY FGIL; 2GSY FHIL; 2GSY GKLN; 1F2N ABC; 2GSY CDLO; 2GSY CEOQ; 2GSY HIS; 3DKW DI; 1XCB ABF; 1XCB DE; 1XCB CDEG; 3DKW DGH; 2GSY HLMT; 2GSY CIOP; 2GSY GIS; 3DKW BEH; 2GSY CHLR; 1XCB CDE; 1XCB ACFG; 2GSY EKOQ; 2GSY FLNP; 1XCB ABDE; 2GSY GI; 2GSY EOP; 2GSY CKOS; 3DKW ABD; 2GSY EIKQ; 1XCB BDEG; 1XCB AEFG; 2GSY HLMN; 1XCB AB; 1XCB DF; 3DKW AIJ; 1XCB AEF; 2GSY FJP; 1XCB BE; 2GSY FKPS; 2GSY DJP; 2GSY GHIL; 3EO6 AB; 1XCB ACDG; 3DKW BDI; 2GSY AJOQ; 1XCB BEG; 2GSY FLNS; 2GSY ABE; 1XCB ACE; 1XCB EF; 1XCB CEFG; 2GSY DJKO; 2GSY FHIR; 1XCB BCE; 2GSY CDLN; 1XCB BCEG; 2GSY GIST; 3DKW CIJ; 1XCB CEF; 2GSY KNOS; 3DKW CDJ; 3DKW BD; 2GSY LN; 2GSY EKQ; 2GSY GHN; 1XCB ADEG; 3DKW BI; 3DKW FIJ; 2GSY GHIK; 2GSY GIR; 3DKW GHJ; 2GSY FJKO; 2GSY INR; 2GSY FKOQ; 1XCB ABCG; 3DKW BCD; 2GSY MRST; 2GSY FKNP; 3DKW FGH; 2GSY EKPQ; 2GSY EIKP; 3DKW CEH; 2GSY HIM; 2GSY HIN; 3DKW CDI; 3DKW AGH; 3DKW BC; 1XCB ABEG; 3DKW EH; 3DKW GH; 2GSY KOQ; 2GSY FIK; 2GSY CHLM; 3DKW GHI; 2GSY GHMN; 2GSY FHIM; 2GSY GIP; 1F2N AC; 3DKW CEF; 2GSY GMRT; 1XCB CE; 3DKW DIJ; 2GSY GHIM; 3DKW FH; 2GSY KOP; 1XCB AF; 2GSY FGIP; 2GSY FNST; 2GSY MR; 2GSY CJKO; 2GSY IMST; 2GSY CGHL; 1XCB DEF; 2GSY EJPQ; 1XCB CDF; 2GSY INRS; 3DKW EHI; 2GSY KOQS; 3DKW CH; 1XCB BCDE; 2GSY EOQ; 3DKW HIJ; 3DKW ABC; 2GSY FHNP; 2GSY FHIN; 2GSY GHR; 3DKW ABG; 2GSY KPQ; 1XCB BDEF; 2GSY EHIP; 1XCB AFG; 1XCB AE; 2GSY GLR; 2GSY HLMR; 2GSY EFST; 2GSY EKOS; 2GSY EFHI; 2GSY FLNR; 2GSY DJQ; 1XCB ABFG; 3DKW DEF; 2GSY FHNS; 2GSY FHIS; 3DKW ABJ; 2GSY HLN; 2GSY KQST; 2GSY GLMR; 2GSY CKOP; 2GSY CJOQ; 2GSY KNOR; 2GSY KOST; 2GSY ABOQ; 2GSY CJOP; 2GSY DEJP; 2GSY FNS; 2GSY AEFK; 1XCB BEFG; 2GSY CLOP; 1XCB ACDE; 3DKW EFJ; 3B9I AB; 3DKW DEH; 3DKW EFG; 2GSY EJKP; 1XCB ACG; 2GSY GHIP; 2GSY IKQS; 2GSY FKNQ; 2GSY FNR; 3DKW ABI; 3DKW CDG; 3DKW CEI; 2GSY EFLN; 1XCB ADFG; 3DKW CGH; 3DKW CDH; 2GSY EFQS; 2GSY AIPQ; 3DKW CFI; 2GSY FP; 1XCB ACEG; 2GSY FGIK; 3DKW EGH; 2GSY ABPQ; 2GSY FJKQ; 3DKW EFI; 2GSY GN; 2GSY KPST; 3DKW AEF; 3ES4 AB; 1XCB ABCE; 3DKW AB; 1XCB CDFG; 2GSY FKST; 1XCB CD; 2GSY GHL; 2GSY EKPS; 2GSY KNST; 2GSY FGIS; 2GSY HIP; 2GSY GIN; 2GSY DJOQ; 1F2N BC; 1XCB ABG; 2GSY KPS; 2GSY FS; 3DKW EF; 1XCB CDG; 2GSY KOS; 2GSY CJKQ; 3DKW CI; 2GSY GHI; 2GSY CHLO; 2GSY GIK; 1XCB BDE; 2GSY AKQ; 3DKW CD; 2GSY DFJP; 2GSY AEFO; 2DI3 AB; 3DKW ABF; 1F2N AB; 2GSY CEOP; 1XCB CG; 3DKW IJ; 1XCB ABE; 1XCB CDEF; 2GSY CILN; 2GSY FI; 1XCB BG; 2GSY HIK; 3DKW BGH; 2GSY GHIN; 2GSY GLN; 2GSY FNP; 2GSY ST; 2GSY EKOP; 3DKW CJ; 3DKW BEF; 2GSY CDGL; 1XCB ADE; 2GSY GH; 3DKW ACD; 2GSY HKLN; 3DKW AEH; 2GSY FHNR; 2GSY FHIP; 1XCB BCG; 3DKW ABE; 2GSY GHMR; 2GSY FIKS; 2GSY CKOQ; 2GSY FKPQ; 3DKW CHI; 2GSY DEJQ; 1XCB AEG; 2QDN AB; 2GSY HLM; 2GSY FGIN; 1XCB AG; 1XCB ACDF; 2GSY FJKP; 3DKW BDH; 2GSY GHIR; 1XCB BEF; 3DKW HI; 2GSY INP; 1XCB ADF; 2GSY FIP; 2GSY GHIS; 3DKW ACI; 2GSY IJNP; 2GSY HIR; 2GSY ACEO; 2GSY GIPS; 3DKW ABH; 2GSY DEJO; 3DKW CDF; 1XCB BCEF;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...