1AU7AB

Pit-1 mutant/dna complex
Warning
  • Temporary problem with connection to RCSB web service - similar chains cannot be displayed.
  • Temporary problem with connection to RCSB web service - similar chains cannot be displayed.
A: 76-103 B: 74-103
Link type Probability Chain A piercings Chain B piercings
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Unlink Unlink 53% +105B -160B -55A +161A
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Unlink Unlink 53% +105B -160B -55A +161A
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Unlink Unlink 53% +105B -160B -55A +161A
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Unlink Unlink 53% +105B -160B -55A +161A
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Unlink Unlink 53% +105B -160B -55A +161A
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Unlink Unlink 53% +105B -160B -55A +161A
view details
Unlink Unlink 53% +105B -160B -55A +161A
view details
Unlink Unlink 53% +105B -160B -55A +161A
view details
Unlink Unlink 53% +105B -160B -55A +161A
view details
Unlink Unlink 53% +105B -160B -55A +161A
view details
Unlink Unlink 53% +105B -160B -55A +161A
view details
Unlink Unlink 53% +105B -160B -55A +161A
view details
Unlink Unlink 53% +105B -160B -55A +161A
view details
Unlink Unlink 53% +105B -160B -55A +161A
view details
Unlink Unlink 53% +105B -160B -55A +161A
view details
Unlink Unlink 53% +105B -160B -55A +161A
Interpreting sequences
Chain A Sequence
GMRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQ--------------------------KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK
Chain A Sequence
GMRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEA----------------------------KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK
sequence length 146,146
structure length 130,128
publication title Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility.
pubmed rcsb
molecule tags Transcription/dna
molecule keywords CONSENSUS DNA 25-MER
source organism Rattus norvegicus
missing residues A: 76-103 B: 74-103
pdb deposition date1997-09-12
LinkProt deposition date2016-08-17

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
AB PF00046 HomeoboxHomeobox domain
AB PF00157 PouPou domain - N-terminal to homeobox domain
AB PF00046 HomeoboxHomeobox domain
AB PF00157 PouPou domain - N-terminal to homeobox domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.10.60 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Homeodomain-like 1au7A02
1.10.260.40 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) lambda repressor-like DNA-binding domains 1au7A01
1.10.10.60 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Homeodomain-like 1au7B02
1.10.260.40 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) lambda repressor-like DNA-binding domains 1au7B01
1AU7AB
chains in the LinkProt database with same CATH superfamily
1XCBCEG 3DKWFIJ 1XCBACEF 1XCBADEF 3DKWBIJ 3DKWEFH 3DKWCDE 1XCBABEF 3DKWEG 3DKWEIJ 3DKWEHJ 1XCBBCDG 1XCBABDF 3DKWCE 3DKWDI 1XCBABF 1XCBDE 1XCBCDEG 3DKWDGH 3DKWBEH 1XCBCDE 1XCBACFG 1XCBABDE 3DKWABD 1XCBBDEG 1XCBAEFG 1XCBAB 1XCBDF 3DKWAIJ 1XCBAEF 1XCBBE 1XCBACDG 3DKWBDI 1XCBBEG 1XCBACE 1XCBEF 1XCBCEFG 1XCBBCE 1XCBBCEG 3DKWCIJ 1XCBCEF 3DKWCDJ 3DKWBD 1XCBADEG 3DKWBI 1AU7AB 3DKWGHJ 1XCBABCG 3DKWBCD 3DKWFGH 3DKWCEH 3DKWCDI 3DKWAGH 3DKWBC 1XCBABEG 3DKWEH 3DKWGH 3DKWGHI 3DKWCEF 1XCBCE 3DKWDIJ 3DKWFH 1XCBAF 1XCBDEF 1XCBCDF 3DKWEHI 3DKWCH 1XCBBCDE 3DKWHIJ 3DKWABC 3DKWABG 1XCBBDEF 1XCBAFG 1XCBAE 1XCBABFG 3DKWDEF 3DKWABJ 1XCBBEFG 1XCBACDE 3DKWEFJ 3DKWDEH 3DKWEFG 1XCBACG 3DKWABI 3DKWCDG 3DKWCEI 1XCBADFG 3DKWCGH 3DKWCDH 3DKWCFI 1XCBACEG 3DKWEGH 3DKWEFI 3DKWAEF 1XCBABCE 3DKWAB 1XCBCDFG 1XCBCD 1XCBABG 3DKWEF 1XCBCDG 3DKWCI 1XCBBDE 3DKWCD 2DI3AB 3DKWABF 1XCBCG 3DKWIJ 1XCBABE 1XCBCDEF 1XCBBG 3DKWBGH 3DKWCJ 3DKWBEF 1XCBADE 3DKWACD 3DKWAEH 1XCBBCG 3DKWABE 3DKWCHI 1XCBAEG 1XCBAG 1XCBACDF 3DKWBDH 1XCBBEF 3DKWHI 1XCBADF 3DKWACI 3DKWABH 3DKWCDF 1XCBBCEF
chains in the LinkProt database with same CATH topology
1AU7AB
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 1AU7 AB; 
#chains in the LinkProt database with same CATH topology
 1XCB CEG;  3DKW FIJ;  1XCB ACEF;  1XCB ADEF;  3DKW BIJ;  3DKW EFH;  3DKW CDE;  1XCB ABEF;  3DKW EG;  3DKW EIJ;  3DKW EHJ;  1XCB BCDG;  1XCB ABDF;  3DKW CE;  3DKW DI;  1XCB ABF;  1XCB DE;  1XCB CDEG;  3DKW DGH;  3DKW BEH;  1XCB CDE;  1XCB ACFG;  1XCB ABDE;  3DKW ABD;  1XCB BDEG;  1XCB AEFG;  1XCB AB;  1XCB DF;  3DKW AIJ;  1XCB AEF;  1XCB BE;  1XCB ACDG;  3DKW BDI;  1XCB BEG;  1XCB ACE;  1XCB EF;  1XCB CEFG;  1XCB BCE;  1XCB BCEG;  3DKW CIJ;  1XCB CEF;  3DKW CDJ;  3DKW BD;  1XCB ADEG;  3DKW BI;  1AU7 AB;  3DKW GHJ;  1XCB ABCG;  3DKW BCD;  3DKW FGH;  3DKW CEH;  3DKW CDI;  3DKW AGH;  3DKW BC;  1XCB ABEG;  3DKW EH;  3DKW GH;  3DKW GHI;  3DKW CEF;  1XCB CE;  3DKW DIJ;  3DKW FH;  1XCB AF;  1XCB DEF;  1XCB CDF;  3DKW EHI;  3DKW CH;  1XCB BCDE;  3DKW HIJ;  3DKW ABC;  3DKW ABG;  1XCB BDEF;  1XCB AFG;  1XCB AE;  1XCB ABFG;  3DKW DEF;  3DKW ABJ;  1XCB BEFG;  1XCB ACDE;  3DKW EFJ;  3DKW DEH;  3DKW EFG;  1XCB ACG;  3DKW ABI;  3DKW CDG;  3DKW CEI;  1XCB ADFG;  3DKW CGH;  3DKW CDH;  3DKW CFI;  1XCB ACEG;  3DKW EGH;  3DKW EFI;  3DKW AEF;  1XCB ABCE;  3DKW AB;  1XCB CDFG;  1XCB CD;  1XCB ABG;  3DKW EF;  1XCB CDG;  3DKW CI;  1XCB BDE;  3DKW CD;  2DI3 AB;  3DKW ABF;  1XCB CG;  3DKW IJ;  1XCB ABE;  1XCB CDEF;  1XCB BG;  3DKW BGH;  3DKW CJ;  3DKW BEF;  1XCB ADE;  3DKW ACD;  3DKW AEH;  1XCB BCG;  3DKW ABE;  3DKW CHI;  1XCB AEG;  1XCB AG;  1XCB ACDF;  3DKW BDH;  1XCB BEF;  3DKW HI;  1XCB ADF;  3DKW ACI;  3DKW ABH;  3DKW CDF;  1XCB BCEF; 
#chains in the LinkProt database with same CATH homology
 1AU7 AB; 
Warning
  • This is a unique chain - no homologues found.


 
            
               
               
           

LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling