| /static/lasso_data/<pdbid>/<chains>/<pdbid>.pdb_<chains>.pdb.gz | For every protein with links in the LinkProt database it is possible to download a file containing the PDB file. |
| /static/lasso_data/<pdbid>/<chains>/<pdbid>.pdb_<chains>.xyz.tar.gz | For every protein with links in the LinkProt database it is possible to download a file containing the 3D coordinates of residues in the chains. |
| /links.txt.gz | List all chains with links in LinkProt. Lists only published ones |
| /artifacts.txt.gz | List all artifact chains in LinkProt |
| /unlinks.txt.gz | List all unlinked chains in LinkProt |
| /_all | List all proteins (PDB IDs) in LinkProt |
| /allchains.txt.gz | List all proteins chains in LinkProt |
The results page of any search run on LinkProt has a "raw" button which can be used to open a CSV formatted list of results
Example - display CSV formatted list of Non-redundant protein chains with link type Hopf_1 and SS Bonds found at a 30% cutoff
https://linkprot.cent.uw.edu.pl/browse/?raw=1&linkType=Hopf_1&ssbond=1&set=0&cutoff=30
The query can be specified using the following GET parameters
| Parameter | Values/Type | Description |
|---|---|---|
| Parameters for searching for links | ||
| raw | {0, 1} | if "1" returns results as a "raw" text file instead of a webpage |
| linkType | String | Show results for given type of link - please have a look at the Search page to see examples |
| fingerprinttags | String | Show results for given type of link shown as fingerprint - please have a look at the bottom of the Search page to see examples |
| artifact | {0, 1} | If set to 1 - show results for artifacts |
| set | {0, 1} | if 1 returns full list of results, if 0 or empty only for Non-Redundant chains |
| ssbond | {0, 1} | If 1 returns links made by covalent bridges (deterministic), if 0 returns links made by closing the chains on a sphere (stochastic) |
| cutoff | Integer (1-100) | Filter results by probability cutoff percentage (percentage) for links found with stochastic method |
| groupon | {0, 1} | If 1 return results grouped by main type of link (e.g. "Hopf" instead of "Hopf.1" and "Hopf.2") |
| molkey | String | return results for the given Molecule Keyword |
| moltag | String | return results for the given Molecule Tags |
| pfam | String | return results for the given PFAM descriptor |
| ec | String | return results for the given EC code |
| cath | String | return results for the given CATH topology |
| catha | String | return results for the given CATH architecture |
| cathc | String | return results for the given CATH class |
| caths | String | return results for the given CATH Organism type |
| tag | String | return results for the given Tag keyword |
