Link type | Probability | Chain K piercings | Chain P piercings | Chain S piercings | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P | |||||||||||
view details | Unlink | 22% | +196P +240P -256P +279P -295P -339P |
Chain K Sequence |
TQQIVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQGNGNYKFDQMLLTAQNLPASYNYCRLVSRSLTVRSSTLP-----LNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLPTSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGLVLGATIYLIGFDGTTVITRAVAANNGLTTGTDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSARGSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERDRLGIKTVWPTREYTDFREYFMEVADLNSPLKIAG |
Chain K Sequence |
TQQIVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQGNGNYKFDQMLLTAQNLPASYNYCRLVSRSLTVRSSTLPG---ALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLPTSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGLVLGATIYLIGFDGTTVITRAVAANNGLTTGTDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSARGSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERDRLGIKTVWPTREYTDFREYFMEVADLNSPLKIAG |
Chain K Sequence |
TQQIVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQGNGNYKFDQMLLTAQNLPASYNYCRLVSRSLTVRSSTLP-----LNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLPTSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGLVLGATIYLIGFDGTTVITRAVAANNGLTTGTDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSARGSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERDRLGIKTVWPTREYTDFREYFMEVADLNSPLKIAG |
sequence length | 433,433,433 |
structure length | 428,430,428 |
publication title |
The 2.6-angstrom structure of infectious bursal disease virus-derived t=1 particles reveals new stabilizing elements of the virus capsid.
pubmed doi rcsb |
molecule tags | Virus |
molecule keywords | polyprotein |
source organism | Infectious bursal disease virus |
missing residues | K: 114-120 P: 115-119 S: 114-120 |
pdb deposition date | 2006-04-27 |
LinkProt deposition date | 2016-10-22 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
KPS | PF01766 | Birna_VP2 | Birnavirus VP2 protein |
KPS | PF01768 | Birna_VP4 | Birnavirus VP4 protein |
KPS | PF01766 | Birna_VP2 | Birnavirus VP2 protein |
KPS | PF01768 | Birna_VP4 | Birnavirus VP4 protein |
KPS | PF01766 | Birna_VP2 | Birnavirus VP2 protein |
KPS | PF01768 | Birna_VP4 | Birnavirus VP4 protein |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | ||
Mainly Beta | Sandwich | Jelly Rolls | icosahedral virus | ||
Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | ||
Mainly Beta | Sandwich | Jelly Rolls | icosahedral virus | ||
Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | ||
Mainly Beta | Sandwich | Jelly Rolls | icosahedral virus |
#chains in the LinkProt database with same CATH superfamily 2GSY FJNP; 2GSY HIL; 2GSY KNOP; 2GSY JKQS; 2GSY EKP; 2GSY CDLO; 2GSY JOP; 2GSY MNRT; 2GSY GHM; 2GSY INS; 2GSY FHIK; 2GSY GR; 2GSY FNP; 2GSY GHMT; 2GSY FGIR; 2GSY EIKO; 2GSY GIPQ; 2GSY ABD; 2GSY KPST; 2GSY GIL; 2GSY CEKO; 2GSY FHIL; 2GSY GKLN; 1F2N ABC; 2GSY CEOQ; 2GSY FJKQ; 2GSY HIR; 2GSY HLMT; 2GSY CIOP; 2GSY CHLR; 2GSY EKOQ; 2GSY FLNP; 2GSY EOP; 2GSY GI; 2GSY DEJO; 2GSY HLMN; 2GSY GHMN; 2GSY FJP; 2GSY HLN; 2GSY GHIL; 2GSY EJPQ; 2GSY AJOQ; 2GSY FLNS; 2GSY DJP; 2GSY GHIR; 2GSY DJKO; 2GSY EKPS; 2GSY ST; 2GSY GIST; 2GSY FJKP; 2GSY KNOS; 2GSY GHL; 2GSY LN; 2GSY EKQ; 2GSY GHN; 2GSY FGIL; 2GSY GHIK; 2GSY GIR; 2GSY FJKO; 2GSY INR; 2GSY FKOQ; 2GSY GIS; 2GSY FKNP; 2GSY FKPS; 2GSY EKPQ; 2GSY HIM; 2GSY HIN; 2GSY EIKP; 2GSY MR; 2GSY FGIK; 2GSY KOQ; 2GSY GN; 2GSY CHLM; 2GSY FNST; 2GSY FHIM; 2GSY GIP; 1F2N AC; 2GSY CJKQ; 2GSY GMRT; 2GSY MRST; 2GSY FGIP; 2GSY AEFO; 2GSY CJKO; 2GSY IMST; 2GSY CGHL; 2GSY FIKS; 2GSY INRS; 2GSY GIPS; 2GSY KOQS; 2GSY HKLN; 2GSY CHLN; 2GSY EOQ; 2GSY FHNP; 2GSY FHIN; 2GSY GHR; 2GSY KPQ; 2GSY CKOS; 2GSY EHIP; 2GSY GLR; 2GSY HLMR; 2GSY EKOS; 2GSY EFHI; 2GSY FLNR; 2GSY DJQ; 2GSY FHNS; 2GSY FHIS; 2GSY KQST; 2GSY GLMR; 2GSY CKOP; 2GSY KNOR; 2GSY KOST; 2GSY ABOQ; 2GSY DEJP; 2GSY AEFK; 2GSY CLOP; 2GSY AKQ; 2GSY HLR; 2GSY EJKP; 2GSY KOP; 2GSY GHIP; 2GSY FKNQ; 2GSY FNR; 2GSY FNS; 2GSY EFLN; 2GSY FGIN; 2GSY FGLN; 2GSY EIKQ; 2GSY EFQS; 2GSY AIPQ; 2GSY FP; 2GSY CDLN; 2GSY ABPQ; 2GSY FIK; 2GSY CJOP; 2GSY EFST; 2GSY FHIR; 2GSY KNST; 2GSY FGIS; 2GSY HIP; 2GSY GIN; 2GSY DJOQ; 1F2N BC; 2GSY FKST; 2GSY FS; 2GSY KOS; 2GSY ABE; 2GSY GHI; 2GSY CHLO; 2GSY GIK; 2GSY CJOQ; 2GSY DFJP; 2GSY IKQS; 1F2N AB; 2GSY CEOP; 2GSY DJOP; 2GSY HIS; 2GSY CILN; 2GSY FI; 2GSY HIK; 2GSY GHIN; 2GSY GLN; 2GSY EKOP; 2GSY EFHN; 2GSY GH; 2GSY FHNR; 2GSY FHIP; 2GSY GHMR; 2GSY KPS; 2GSY CKOQ; 2GSY ACEO; 2GSY DEJQ; 2GSY ABQ; 2GSY HLM; 2GSY CDGL; 2GSY GHIM; 2GSY INP; 2GSY FIP; 2GSY GHIS; 2GSY IJNP; 2GSY FKPQ; #chains in the LinkProt database with same CATH topology 2GSY FJNP; 2GSY HIL; 2GSY KNOP; 2GSY JKQS; 2GSY AEFO; 3DKW EIJ; 2GSY EKP; 2GSY CDLO; 2GSY JOP; 2GSY MNRT; 3DKW BIJ; 3DKW EFH; 2GSY GHM; 2GSY INS; 2GSY FHIK; 2GSY GR; 2GSY FNP; 2GSY EFHN; 3DKW CDE; 2GSY GHMT; 2GSY FGIR; 2GSY DJOP; 2GSY EIKO; 3DKW EG; 3DKW EHJ; 2GSY GIPQ; 2GSY ABD; 2GSY KPST; 2GSY GIL; 2GSY CEKO; 3DKW CE; 2GSY FHIL; 2GSY GKLN; 1F2N ABC; 2GSY GHL; 2GSY CEOQ; 3DKW DI; 2GSY FGIK; 2GSY HIR; 3DKW DGH; 2GSY HLMT; 2GSY CIOP; 3DKW BEH; 2GSY CHLR; 2GSY EKOQ; 2GSY FLNP; 2GSY EOP; 2GSY GI; 2GSY FGLN; 2GSY CJOP; 3DKW ABD; 2GSY EIKQ; 2GSY FJKQ; 2GSY DEJO; 2GSY HLMN; 2GSY GHMN; 3DKW AIJ; 2GSY FJP; 3DKW FGH; 2GSY GHIL; 3EO6 AB; 2GSY EJPQ; 3DKW BDI; 2GSY AJOQ; 2GSY FLNS; 2GSY DJP; 2GSY GHIR; 2GSY DJKO; 2GSY FHIR; 2GSY ST; 2GSY GIST; 3DKW CIJ; 2GSY KNOS; 3DKW CDJ; 3DKW BD; 2GSY LN; 2GSY EKQ; 2GSY GHN; 3DKW BI; 3DKW FIJ; 2GSY GHIK; 2GSY GIR; 3DKW GHJ; 2GSY FJKO; 2GSY INR; 2GSY FKOQ; 2GSY GIS; 3DKW BCD; 2GSY FKNP; 2GSY FKPS; 2GSY EKPQ; 2GSY EIKP; 3DKW CEH; 2GSY HIM; 2GSY HIN; 3DKW CDI; 3DKW AGH; 3DKW BC; 3DKW EH; 3DKW GH; 2GSY KOQ; 2GSY FIK; 2GSY CHLM; 3DKW GHI; 2GSY FNST; 2GSY FHIM; 2GSY GIP; 1F2N AC; 3DKW CEF; 2GSY GMRT; 2GSY MRST; 3DKW DIJ; 3DKW FH; 2GSY FGIP; 2GSY MR; 2GSY CJKO; 2GSY IMST; 2GSY CGHL; 2GSY FIKS; 2QDN AB; 2GSY INRS; 3DKW EHI; 2GSY KOQS; 3DKW CH; 2GSY CHLN; 2GSY EOQ; 3DKW HIJ; 3DKW ABC; 2GSY FHNP; 2GSY FHIN; 2GSY GHR; 3DKW ABG; 2GSY KPQ; 2GSY CKOS; 2GSY EHIP; 2GSY GLR; 2GSY HLMR; 2GSY EKOS; 2GSY EFHI; 2GSY FLNR; 2GSY DJQ; 3DKW DEF; 2GSY FHNS; 2GSY FHIS; 3DKW ABJ; 2GSY HLN; 2GSY KQST; 2GSY GLMR; 2GSY CKOP; 2GSY KNOR; 2GSY KOST; 2GSY ABOQ; 2GSY DEJP; 2GSY FNS; 2GSY AEFK; 2GSY CLOP; 2GSY AKQ; 3DKW EFJ; 3B9I AB; 3DKW DEH; 3DKW EFG; 2GSY EJKP; 2GSY KOP; 2GSY GHIP; 2GSY FKNQ; 2GSY FNR; 3DKW ABI; 3DKW CDG; 3DKW CEI; 2GSY EFLN; 2GSY CDGL; 3DKW CGH; 3DKW CDH; 2GSY EFQS; 2GSY AIPQ; 3DKW CFI; 2GSY FP; 2GSY CDLN; 3DKW EGH; 2GSY ABPQ; 3DKW EFI; 2GSY GN; 3DKW AEF; 3ES4 AB; 3DKW AB; 2GSY EFST; 2GSY EKPS; 2GSY KNST; 2GSY FGIS; 2GSY HIP; 2GSY GIN; 2GSY DJOQ; 1F2N BC; 2GSY FKST; 2GSY FS; 3DKW EF; 2GSY KOS; 2GSY CJKQ; 3DKW CI; 2GSY GHI; 2GSY CHLO; 2GSY GIK; 2GSY CJOQ; 3DKW CD; 2GSY DFJP; 3DKW ABF; 1F2N AB; 2GSY CEOP; 2GSY ABE; 3DKW IJ; 2GSY HIS; 2GSY CILN; 2GSY FI; 2GSY HIK; 3DKW BGH; 2GSY GHIN; 2GSY GLN; 1QEX AB; 2GSY EKOP; 3DKW CJ; 3DKW BEF; 2GSY GH; 3DKW ACD; 2GSY HKLN; 3DKW AEH; 2GSY FHNR; 2GSY FHIP; 3DKW ABE; 2GSY GHMR; 2GSY KPS; 2GSY CKOQ; 2GSY ACEO; 3DKW CHI; 2GSY DEJQ; 2GSY ABQ; 2GSY HLM; 2GSY FGIN; 2GSY GHIM; 2GSY FJKP; 3DKW BDH; 3DKW HI; 2GSY INP; 2GSY FGIL; 2GSY FIP; 2GSY GHIS; 3DKW ACI; 2GSY IJNP; 2GSY FKPQ; 2GSY GIPS; 3DKW ABH; 2GSY IKQS; 3DKW CDF; 2GSY HLR; #chains in the LinkProt database with same CATH homology 2GSY FJNP; 2GSY HIL; 2GSY KNOP; 2GSY JKQS; 2GSY AEFO; 3DKW EIJ; 2GSY EKP; 2GSY CDLO; 2GSY JOP; 2GSY MNRT; 3DKW BIJ; 3DKW EFH; 2GSY GHM; 2GSY INS; 2GSY FHIK; 2GSY GR; 2GSY FNP; 2GSY EFHN; 3DKW CDE; 2GSY GHMT; 2GSY FGIR; 2GSY DJOP; 2GSY EIKO; 3DKW EG; 3DKW EHJ; 2GSY GIPQ; 2GSY ABD; 2GSY KPST; 2GSY GIL; 2GSY CEKO; 3DKW CE; 2GSY FHIL; 2GSY GKLN; 1F2N ABC; 2GSY GHL; 2GSY CEOQ; 3DKW DI; 2GSY FGIK; 2GSY HIR; 3DKW DGH; 2GSY HLMT; 2GSY CIOP; 3DKW BEH; 2GSY CHLR; 2GSY EKOQ; 2GSY FLNP; 2GSY EOP; 2GSY GI; 2GSY FGLN; 2GSY CJOP; 3DKW ABD; 2GSY EIKQ; 2GSY FJKQ; 2GSY DEJO; 2GSY HLMN; 2GSY GHMN; 3DKW AIJ; 2GSY FJP; 3DKW FGH; 2GSY GHIL; 3EO6 AB; 2GSY EJPQ; 3DKW BDI; 2GSY AJOQ; 2GSY FLNS; 2GSY DJP; 2GSY GHIR; 2GSY DJKO; 2GSY FHIR; 2GSY ST; 2GSY GIST; 3DKW CIJ; 2GSY KNOS; 3DKW CDJ; 3DKW BD; 2GSY LN; 2GSY EKQ; 2GSY GHN; 3DKW BI; 3DKW FIJ; 2GSY GHIK; 2GSY GIR; 3DKW GHJ; 2GSY FJKO; 2GSY INR; 2GSY FKOQ; 2GSY GIS; 3DKW BCD; 2GSY FKNP; 2GSY FKPS; 2GSY EKPQ; 2GSY EIKP; 3DKW CEH; 2GSY HIM; 2GSY HIN; 3DKW CDI; 3DKW AGH; 3DKW BC; 3DKW EH; 3DKW GH; 2GSY KOQ; 2GSY FIK; 2GSY CHLM; 3DKW GHI; 2GSY FNST; 2GSY FHIM; 2GSY GIP; 1F2N AC; 3DKW CEF; 2GSY GMRT; 2GSY MRST; 3DKW DIJ; 3DKW FH; 2GSY FGIP; 2GSY MR; 2GSY CJKO; 2GSY IMST; 2GSY CGHL; 2GSY FIKS; 2QDN AB; 2GSY INRS; 3DKW EHI; 2GSY KOQS; 3DKW CH; 2GSY CHLN; 2GSY EOQ; 3DKW HIJ; 3DKW ABC; 2GSY FHNP; 2GSY FHIN; 2GSY GHR; 3DKW ABG; 2GSY KPQ; 2GSY CKOS; 2GSY EHIP; 2GSY GLR; 2GSY HLMR; 2GSY EKOS; 2GSY EFHI; 2GSY FLNR; 2GSY DJQ; 3DKW DEF; 2GSY FHNS; 2GSY FHIS; 3DKW ABJ; 2GSY HLN; 2GSY KQST; 2GSY GLMR; 2GSY CKOP; 2GSY KNOR; 2GSY KOST; 2GSY ABOQ; 2GSY DEJP; 2GSY FNS; 2GSY AEFK; 2GSY CLOP; 2GSY AKQ; 3DKW EFJ; 3B9I AB; 3DKW DEH; 3DKW EFG; 2GSY EJKP; 2GSY KOP; 2GSY GHIP; 2GSY FKNQ; 2GSY FNR; 3DKW ABI; 3DKW CDG; 3DKW CEI; 2GSY EFLN; 2GSY CDGL; 3DKW CGH; 3DKW CDH; 2GSY EFQS; 2GSY AIPQ; 3DKW CFI; 2GSY FP; 2GSY CDLN; 3DKW EGH; 2GSY ABPQ; 3DKW EFI; 2GSY GN; 3DKW AEF; 3ES4 AB; 3DKW AB; 2GSY EFST; 2GSY EKPS; 2GSY KNST; 2GSY FGIS; 2GSY HIP; 2GSY GIN; 2GSY DJOQ; 1F2N BC; 2GSY FKST; 2GSY FS; 3DKW EF; 2GSY KOS; 2GSY CJKQ; 3DKW CI; 2GSY GHI; 2GSY CHLO; 2GSY GIK; 2GSY CJOQ; 3DKW CD; 2GSY DFJP; 3DKW ABF; 1F2N AB; 2GSY CEOP; 2GSY ABE; 3DKW IJ; 2GSY HIS; 2GSY CILN; 2GSY FI; 2GSY HIK; 3DKW BGH; 2GSY GHIN; 2GSY GLN; 2GSY EKOP; 3DKW CJ; 3DKW BEF; 2GSY GH; 3DKW ACD; 2GSY HKLN; 3DKW AEH; 2GSY FHNR; 2GSY FHIP; 3DKW ABE; 2GSY GHMR; 2GSY KPS; 2GSY CKOQ; 2GSY ACEO; 3DKW CHI; 2GSY DEJQ; 2GSY ABQ; 2GSY HLM; 2GSY FGIN; 2GSY GHIM; 2GSY FJKP; 3DKW BDH; 3DKW HI; 2GSY INP; 2GSY FGIL; 2GSY FIP; 2GSY GHIS; 3DKW ACI; 2GSY IJNP; 2GSY FKPQ; 2GSY GIPS; 3DKW ABH; 2GSY IKQS; 3DKW CDF; 2GSY HLR;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...