| Link type | Probability | Chain A piercings | Chain B piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
| view details |
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
| view details |
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
| view details |
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
| view details |
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
| view details |
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
| view details |
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
| view details |
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
| view details |
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
| view details |
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Unlink | 43% | +80B +135B -145B +166B -199B -232B | |||||||||
Chain A Sequence |
SVKAHESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQALSLSVTLQLVTNQVGHHDIYETRQLLEGWAALHSSAERGDWDVAEALLEKMDDPSLPLEDFLRFDAEFHVVISKGAENPLISTLMEALRLSVADHTVARARALPDWRATSARLQKEHRAILAALRAGESTVAATLIKEHIEGYYEETAAAEAL |
Chain A Sequence |
SVKAHESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQALSLSVTLQLVTNQVGHHDIYETRQLLEGWAALHSSAERGDWDVAEALLEKMDDPSLPLEDFLRFDAEFHVVISKGAENPLISTLMEALRLSVADHTVARARALPDWRATSARLQKEHRAILAALRAGESTVAATLIKEHIEGYYEETAAAEA |
| sequence length | 231,230 |
| structure length | 231,230 |
| publication title |
Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization
pubmed doi rcsb |
| molecule tags | Transcription |
| molecule keywords | Bacterial regulatory proteins, GntR family |
| source organism | Corynebacterium glutamicum |
| pdb deposition date | 2006-03-28 |
| LinkProt deposition date | 2016-10-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| AB | PF00392 | GntR | Bacterial regulatory proteins, gntR family |
| AB | PF07729 | FCD | FCD domain |
| AB | PF00392 | GntR | Bacterial regulatory proteins, gntR family |
| AB | PF07729 | FCD | FCD domain |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | "winged helix" repressor DNA binding domain | ||
| Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | GntR ligand-binding domain-like | ||
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | "winged helix" repressor DNA binding domain | ||
| Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | GntR ligand-binding domain-like |
#chains in the LinkProt database with same CATH superfamily 1XCB CEG; 3DKW EIJ; 1XCB ACEF; 1XCB ADEF; 3DKW BIJ; 3DKW EFH; 3DKW CDE; 1XCB ABEF; 3DKW EG; 3DKW EHJ; 1XCB BCDG; 1XCB ABDF; 3DKW CE; 3DKW DI; 1XCB ABF; 1XCB DE; 1XCB CDEG; 3DKW DGH; 3DKW BEH; 1XCB CDE; 1XCB ACFG; 1XCB ABDE; 3DKW ABD; 1XCB BDEG; 1XCB AEFG; 1XCB AB; 1XCB DF; 3DKW AIJ; 1XCB AEF; 1XCB BE; 1XCB ACDG; 3DKW BDI; 1XCB BEG; 1XCB ACE; 1XCB EF; 1XCB CEFG; 1XCB BCE; 1XCB BCEG; 3DKW CIJ; 1XCB CEF; 3DKW CDJ; 3DKW BD; 1XCB ADEG; 3DKW BI; 3DKW FIJ; 3DKW GHJ; 1XCB ABCG; 3DKW BCD; 3DKW FGH; 3DKW CEH; 3DKW CDI; 3DKW AGH; 3DKW BC; 1XCB ABEG; 3DKW EH; 3DKW GH; 3DKW GHI; 3DKW CEF; 1XCB CE; 3DKW DIJ; 3DKW FH; 1XCB AF; 1XCB DEF; 1XCB CDF; 3DKW EHI; 3DKW CH; 1XCB BCDE; 3DKW HIJ; 3DKW ABC; 3DKW ABG; 1XCB BDEF; 1XCB AFG; 1XCB AE; 1XCB ABFG; 3DKW DEF; 3DKW ABJ; 1XCB BEFG; 1XCB ACDE; 3DKW EFJ; 3DKW DEH; 3DKW EFG; 1XCB ACG; 3DKW ABI; 3DKW CDG; 3DKW CEI; 1XCB ADFG; 3DKW CGH; 3DKW CDH; 3DKW CFI; 1XCB ACEG; 3DKW EGH; 3DKW EFI; 3DKW AEF; 1XCB ABCE; 3DKW AB; 1XCB CDFG; 1XCB CD; 1XCB ABG; 3DKW EF; 1XCB CDG; 3DKW CI; 1XCB BDE; 3DKW CD; 2DI3 AB; 3DKW ABF; 1XCB CG; 3DKW IJ; 1XCB ABE; 1XCB CDEF; 1XCB BG; 3DKW BGH; 3DKW CJ; 3DKW BEF; 1XCB ADE; 3DKW ACD; 3DKW AEH; 1XCB BCG; 3DKW ABE; 3DKW CHI; 1XCB AEG; 1XCB AG; 1XCB ACDF; 3DKW BDH; 1XCB BEF; 3DKW HI; 1XCB ADF; 3DKW ACI; 3DKW ABH; 3DKW CDF; 1XCB BCEF; #chains in the LinkProt database with same CATH topology 3DKW EIJ; 1XCB ACEF; 1XCB ADEF; 3JSE CDS; 3JTL DOP; 3JTL FPT; 3JSE BPR; 3JTL FP; 3JSE ABQ; 3JSE BRS; 1XCB ABEF; 3JSE CQS; 3JSE EU; 1XCB ABDF; 3JSE FGO; 3JTL APQ; 3JTL AMR; 3JTL DGO; 3JSE DFT; 1OW6 CF; 1XCB BDEG; 1XCB BE; 3JTL CQR; 1XCB BCEG; 3JSE FNQ; 3JSE GOP; 1AU7 AB; 3JTL AP; 3JTL DNQ; 3JSE AQ; 3DKW BC; 3JSE EOU; 3DKW GH; 3JSE EO; 3JSE BQR; 3JSE FP; 3DKW CEF; 3DKW DIJ; 3DKW FH; 1XCB ABG; 3JSE FPR; 3JTL DEQ; 3JSE GPR; 3DKW CH; 3JSE ACS; 3DKW ABG; 1XCB AE; 3JSE AGP; 1XCB ABFG; 3JSE FQT; 3JTL FLO; 3JTL GPS; 3JSE CDU; 3JTL ASU; 3JTL AR; 3JSE CT; 3JTL GMQ; 3JSE BST; 3DKW CGH; 3DKW CDH; 3JTL CPT; 3DKW EFI; 3JTL BPQ; 1XCB CD; 3JSE AHQ; 3JTL TU; 3DKW EF; 3JTL BLS; 3JTL GQU; 3JTL EPR; 3JSE FMU; 1XCB BDE; 3DKW CD; 3JSE DT; 3JSE FMO; 3JTL AKP; 3JTL RS; 1XCB BG; 3JSE CRS; 3JTL DRU; 3JSE FU; 3JSE ESU; 1OW6 BCD; 3DKW CHI; 3JTL FMR; 3JSE GQ; 3JTL FNO; 3JSE DGP; 1XCB ACDF; 3DKW BDH; 1XCB BEF; 3JTL EQR; 3JTL FNQ; 1XCB ADF; 3DKW ABH; 3JTL DOT; 3DKW CDF; 3JTL FGP; 1XCB CEG; 3JSE BCS; 3JTL CS; 3JSE DEU; 3JTL ANS; 3JSE ACQ; 1OW6 ABDF; 3JTL AOR; 1XCB AG; 1XCB CDEG; 1XCB ABDE; 3JTL BPT; 3JSE FQR; 3JTL DFO; 3JTL APT; 3DKW AIJ; 1XCB AEF; 3JTL GKO; 3JSE EFP; 3JTL GRU; 3JSE GRS; 3JTL FQU; 3JTL DQS; 3JTL AOU; 3JTL DPR; 3JTL FMP; 3DKW CDJ; 3JTL AFT; 3DKW BI; 3JSE BFR; 3DKW GHJ; 3JSE CSU; 3JTL BPS; 3JSE DOT; 3JTL OU; 3DKW FGH; 3DKW CEH; 3JTL CFP; 3JSE GHQ; 3JSE ST; 3JSE CGS; 1OW6 BC; 3JSE BR; 3DKW EH; 3JTL RTU; 3JTL ST; 3JTL AJO; 1XCB DEF; 1XCB CDF; 3JTL DU; 1XCB BCDE; 1OW6 AD; 1OW6 BCF; 3JSE PST; 3JTL DET; 3JSE GPQ; 3JTL BS; 3JTL GQ; 3DKW ABJ; 3JSE EOQ; 3DKW DEH; 3DKW EFG; 3JSE ADT; 1XCB ACG; 3JSE EGP; 3JSE CEU; 3JSE AR; 1XCB ACEG; 3JSE EFU; 1XCB ABCE; 3DKW ABC; 3JTL FPS; 1XCB CDFG; 3JTL FQ; 3JSE BFO; 3JTL AET; 3JSE AFQ; 3JTL PQ; 1XCB CG; 3JSE DRT; 3DKW BGH; 1OW6 BD; 3JSE AQS; 3JTL FQS; 3DKW BEF; 3DKW ACD; 3DKW AEH; 3JSE BRU; 3JSE AEU; 3JSE GLP; 3JSE BDR; 3JSE BOR; 1XCB BCEF; 3JTL RST; 3JSE FNP; 3JSE DJT; 1XCB ACFG; 3JTL FIO; 3JTL ESU; 3DKW CDE; 3JTL BET; 3JTL DNP; 3DKW EHJ; 3JSE AFO; 3JSE DTU; 3JTL CHP; 1XCB BCDG; 3JSE ADQ; 3JTL CT; 1XCB ABF; 1XCB DE; 3JSE GPS; 3DKW BEH; 3JTL EFT; 3JTL DHQ; 3DKW ABD; 3JTL GNT; 1OW6 ABD; 1XCB AB; 1XCB ACE; 1XCB CEFG; 3JTL ATU; 1OW6 AB; 3JTL DEO; 1XCB ADEG; 3JTL EGP; 1XCB ABCG; 3JTL AQ; 3DKW CDI; 1XCB ABEG; 3JTL BSU; 3JSE QR; 3DKW GHI; 3JTL MQU; 1XCB CE; 1OW6 BCDF; 3JSE EQT; 3JSE FNO; 3JSE CGP; 1OW6 BF; 3JSE BQ; 3DKW EHI; 3DKW HIJ; 3JSE OU; 3JSE DU; 1XCB BDEF; 3JSE IPU; 3JTL EO; 3JSE BDT; 3DKW DEF; 3JTL CFT; 3JSE GP; 1XCB ACDE; 3JTL BOR; 3JTL FNP; 3DKW ABI; 3DKW CDG; 1XCB ADFG; 3JTL COS; 3JTL EMP; 3DKW CFI; 3DKW EGH; 3JTL CIS; 3DKW AB; 3JSE EGU; 3JTL FMT; 3JSE FPS; 3JSE GPU; 3DKW CI; 3JSE CFO; 3JTL FIP; 3DKW ABF; 3JTL GNR; 1OW6 ABF; 1OW6 BDF; 3DKW IJ; 1XCB CDEF; 3JSE AGQ; 3JTL EOU; 3JSE EP; 3JSE FQS; 1XCB AEG; 3JTL EFO; 3JSE CDT; 3JTL CEO; 3JSE EFO; 3DKW ACI; 3JTL FGO; 3JTL FRU; 3JSE ABR; 3JTL AFU; 3DKW BIJ; 3JTL EU; 3DKW EFH; 3JSE COS; 3JSE CST; 3JTL BPR; 3JSE FO; 3JTL STU; 3JTL OT; 3JSE EPS; 3JSE GO; 3JSE BS; 3DKW EG; 3JTL BMS; 3JSE APQ; 3DKW CE; 3JTL EQT; 3JTL DPT; 3JTL NPS; 3DKW DI; 3JTL FO; 3JTL ETU; 3DKW DGH; 3JSE AEQ; 1XCB CDE; 3JTL BFT; 3JSE FJO; 3JSE DIT; 1XCB AEFG; 1XCB DF; 3JSE PSU; 3JSE TU; 1XCB ACDG; 3DKW BDI; 1XCB BEG; 1XCB EF; 3JTL GOP; 3JTL GIP; 1XCB BCE; 3JSE PQ; 2DI3 AB; 1OW6 ABC; 3DKW CIJ; 1XCB CEF; 3DKW BD; 3DKW FIJ; 3JTL CIQ; 3JSE BCR; 3DKW BCD; 1OW6 ABCD; 3JSE GST; 3JSE FPU; 3DKW AGH; 3JSE DET; 3JTL EFP; 3JTL GRS; 3JTL GLP; 3JTL AOS; 1XCB AF; 3JSE LPR; 3JSE ETU; 3JSE ENR; 3JTL BPU; 3JSE DQT; 3JSE AQR; 3JTL KPR; 3JTL QTU; 3JTL FQT; 3JTL ALO; 3JTL DQR; 3JSE CS; 3JSE BRT; 3JSE BGR; 3JTL CPQ; 1XCB BEFG; 3DKW EFJ; 3JSE EPU; 3DKW CEI; 3JTL RSU; 1XCB AFG; 3JTL DSU; 3IQ6 CH; 3JSE EQS; 3JTL CET; 3DKW AEF; 3JTL GP; 3JSE DFO; 3JTL EST; 3JSE CIS; 1XCB CDG; 3JSE BEU; 3JTL DT; 3JSE RS; 1XCB ABE; 3JSE CES; 3JSE DST; 3JTL BR; 3DKW CJ; 1XCB ADE; 1XCB BCG; 3DKW ABE; 3JTL CJR; 3JTL DLT; 3JTL QR; 3JTL AQU; 3DKW HI; 3JSE BCT; 1OW6 ABCF; #chains in the LinkProt database with same CATH homology 1XCB CEG; 3DKW EIJ; 1XCB ACEF; 1XCB ADEF; 3DKW BIJ; 3DKW EFH; 3DKW CDE; 1XCB ABEF; 3DKW EG; 3DKW EHJ; 1XCB BCDG; 1XCB ABDF; 3DKW CE; 3DKW DI; 1XCB ABF; 1XCB DE; 1XCB CDEG; 3DKW DGH; 3DKW BEH; 1XCB CDE; 1XCB ACFG; 1XCB ABDE; 3DKW ABD; 1XCB BDEG; 1XCB AEFG; 1XCB AB; 1XCB DF; 3DKW AIJ; 1XCB AEF; 1XCB BE; 1XCB ACDG; 3DKW BDI; 1XCB BEG; 1XCB ACE; 1XCB EF; 1XCB CEFG; 1XCB BCE; 1XCB BCEG; 3DKW CIJ; 1XCB CEF; 3DKW CDJ; 3DKW BD; 1XCB ADEG; 3DKW BI; 3DKW FIJ; 3DKW GHJ; 1XCB ABCG; 3DKW BCD; 3DKW FGH; 3DKW CEH; 3DKW CDI; 3DKW AGH; 3DKW BC; 1XCB ABEG; 3DKW EH; 3DKW GH; 3DKW GHI; 3DKW CEF; 1XCB CE; 3DKW DIJ; 3DKW FH; 1XCB AF; 1XCB DEF; 1XCB CDF; 3DKW EHI; 3DKW CH; 1XCB BCDE; 3DKW HIJ; 3DKW ABC; 3DKW ABG; 1XCB BDEF; 1XCB AFG; 1XCB AE; 1XCB ABFG; 3DKW DEF; 3DKW ABJ; 1XCB BEFG; 1XCB ACDE; 3DKW EFJ; 3DKW DEH; 3DKW EFG; 1XCB ACG; 3DKW ABI; 3DKW CDG; 3DKW CEI; 1XCB ADFG; 3DKW CGH; 3DKW CDH; 3DKW CFI; 1XCB ACEG; 3DKW EGH; 3DKW EFI; 3DKW AEF; 1XCB ABCE; 3DKW AB; 1XCB CDFG; 1XCB CD; 1XCB ABG; 3DKW EF; 1XCB CDG; 3DKW CI; 1XCB BDE; 3DKW CD; 2DI3 AB; 3DKW ABF; 1XCB CG; 3DKW IJ; 1XCB ABE; 1XCB CDEF; 1XCB BG; 3DKW BGH; 3DKW CJ; 3DKW BEF; 1XCB ADE; 3DKW ACD; 3DKW AEH; 1XCB BCG; 3DKW ABE; 3DKW CHI; 1XCB AEG; 1XCB AG; 1XCB ACDF; 3DKW BDH; 1XCB BEF; 3DKW HI; 1XCB ADF; 3DKW ACI; 3DKW ABH; 3DKW CDF; 1XCB BCEF;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
