3GOSAC

The crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-succinyltransferase from yersinia pestis co92
A: 258-265
Link type Probability Chain A piercings Chain C piercings
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
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Unlink Unlink 60% +246C -274C -263A +274A
Interpreting sequences
Chain A Sequence
QSMQQLQNVIETAFERRADITPANVDTVTREAITHVIDLLDTGALRVAEKIDGQWVTHQWLKKAVLLSFRINDNQVMEGAETRYYDKVPMKFAGYDEARFQREGFRVVPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKVDA------GINELLRTID
Chain A Sequence
QSMQQLQNVIETAFERRADITPANVDTVTREAITHVIDLLDTGALRVAEKIDGQWVTHQWLKKAVLLSFRINDNQVMEGAETRYYDKVPMKFAGYDEARFQREGFRVVPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKVDAKTRSKVGINELLRTID
sequence length 276,276
structure length 270,276
publication title The crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase from Yersinia pestis CO92
rcsb
molecule tags Transferase
molecule keywords 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltrans
source organism Yersinia pestis
missing residues A: 258-265
ec nomenclature ec 2.3.1.11: Thioethanolamine S-acetyltransferase.
ec 2.3.1.117: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase.
ec 2.3.1.11: Thioethanolamine S-acetyltransferase.
ec 2.3.1.117: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase.
pdb deposition date2009-03-19
LinkProt deposition date2016-08-17

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
AC PF00132 HexapepBacterial transferase hexapeptide (six repeats)
AC PF14602 Hexapep_2Hexapeptide repeat of succinyl-transferase
AC PF14805 THDPS_N_2Tetrahydrodipicolinate N-succinyltransferase N-terminal
AC PF00132 HexapepBacterial transferase hexapeptide (six repeats)
AC PF14602 Hexapep_2Hexapeptide repeat of succinyl-transferase
AC PF14805 THDPS_N_2Tetrahydrodipicolinate N-succinyltransferase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.166.10 Mainly Alpha Orthogonal Bundle Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 3gosA01
2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase; domain 1 Hexapeptide repeat proteins 3gosA02
1.10.166.10 Mainly Alpha Orthogonal Bundle Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 3gosC01
2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase; domain 1 Hexapeptide repeat proteins 3gosC02
3GOSABC 3GOSAC 3GOSAB 3EH0BC 3EH0AC 3GOSBC 3EH0AB 3EH0ABC
chains in the LinkProt database with same CATH superfamily
3GOSABC 3GOSAC 3GOSAB 3EH0BC 3EH0AC 3GOSBC 3EH0AB 3EH0ABC
chains in the LinkProt database with same CATH topology
3GOSABC 3GOSAC 3GOSAB 3EH0BC 3EH0AC 3GOSBC 3EH0AB 3EH0ABC
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 3GOS ABC;  3GOS AC;  3GOS AB;  3EH0 BC;  3EH0 AC;  3GOS BC;  3EH0 AB;  3EH0 ABC; 
#chains in the LinkProt database with same CATH topology
 3GOS ABC;  3GOS AC;  3GOS AB;  3EH0 BC;  3EH0 AC;  3GOS BC;  3EH0 AB;  3EH0 ABC; 
#chains in the LinkProt database with same CATH homology
 3GOS ABC;  3GOS AC;  3GOS AB;  3EH0 BC;  3EH0 AC;  3GOS BC;  3EH0 AB;  3EH0 ABC; 
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#similar chains in the LinkProt database (?% sequence similarity)
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#similar chains, but unlinked
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#similar chains in the pdb database (?% sequence similarity)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling