3EH0AC

Crystal structure of lpxd from escherichia coli
Link type Probability Chain A piercings Chain C piercings
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Hopf.2 Hopf.2 47% +184C -195C -326C -317A
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Hopf.2 Hopf.2 47% +184C -195C -326C -317A
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Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
view details
Hopf.2 Hopf.2 47% +184C -195C -326C -317A
Interpreting sequences
Chain A Sequence
MASIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVNPKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLERKVNQQD
Chain A Sequence
MASIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVNPKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLERKVNQQD
sequence length 341,341
structure length 341,341
publication title Crystal structure and acyl chain selectivity of Escherichia coli LpxD, the N-acyltransferase of lipid A biosynthesis
pubmed doi rcsb
molecule tags Transferase
molecule keywords UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
source organism Escherichia coli
ec nomenclature ec 2.3.1.19: Phosphate butyryltransferase.
ec 2.3.1.191: UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase.
ec 2.3.1.19: Phosphate butyryltransferase.
ec 2.3.1.191: UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase.
pdb deposition date2008-09-11
LinkProt deposition date2016-08-17

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
AC PF00132 HexapepBacterial transferase hexapeptide (six repeats)
AC PF04613 LpxDUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
AC PF14602 Hexapep_2Hexapeptide repeat of succinyl-transferase
AC PF00132 HexapepBacterial transferase hexapeptide (six repeats)
AC PF04613 LpxDUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
AC PF14602 Hexapep_2Hexapeptide repeat of succinyl-transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase; domain 1 Hexapeptide repeat proteins 3eh0A02
2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase; domain 1 Hexapeptide repeat proteins 3eh0C02
3GOSAB 3GOSAC 3GOSABC 3EH0BC 3EH0AC 3GOSBC 3EH0ABC 3EH0AB
chains in the LinkProt database with same CATH superfamily
3GOSAB 3GOSAC 3GOSABC 3EH0BC 3EH0AC 3GOSBC 3EH0ABC 3EH0AB
chains in the LinkProt database with same CATH topology
3GOSAB 3GOSAC 3GOSABC 3EH0BC 3EH0AC 3GOSBC 3EH0ABC 3EH0AB
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 3GOS AB;  3GOS AC;  3GOS ABC;  3EH0 BC;  3EH0 AC;  3GOS BC;  3EH0 ABC;  3EH0 AB; 
#chains in the LinkProt database with same CATH topology
 3GOS AB;  3GOS AC;  3GOS ABC;  3EH0 BC;  3EH0 AC;  3GOS BC;  3EH0 ABC;  3EH0 AB; 
#chains in the LinkProt database with same CATH homology
 3GOS AB;  3GOS AC;  3GOS ABC;  3EH0 BC;  3EH0 AC;  3GOS BC;  3EH0 ABC;  3EH0 AB; 
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#similar chains in the LinkProt database (?% sequence similarity)
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#similar chains, but unlinked
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#similar chains in the pdb database (?% sequence similarity)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling