1SNDAB

Staphylococcal nuclease dimer containing a deletion of residues 114-119 complexed with calcium chloride and the competitive inhibitor deoxythymidine-3',5'-diphosphate
A: 113-120 B: 113-120
Link type Probability Chain A piercings Chain B piercings
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Hopf.1 Hopf.1 53% +112B +79A -90A +141A
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Hopf.1 Hopf.1 53% +112B +79A -90A +141A
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Hopf.1 Hopf.1 53% +112B +79A -90A +141A
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Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
view details
Hopf.1 Hopf.1 53% +112B +79A -90A +141A
Interpreting sequences
Chain A Sequence
LHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY------THEQHLRKSEAQAKKEKLNIWS
Chain A Sequence
LHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY------THEQHLRKSEAQAKKEKLNIWS
sequence length 129,129
structure length 129,129
publication title One-step evolution of a dimer from a monomeric protein.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords STAPHYLOCOCCAL NUCLEASE DIMER
source organism Staphylococcus aureus
missing residues A: 113-120 B: 113-120
ec nomenclature ec 3.1.31.1: Micrococcal nuclease.
ec 3.1.31.1: Micrococcal nuclease.
pdb deposition date1996-08-23
LinkProt deposition date2016-10-22

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
AB PF00565 SNaseStaphylococcal nuclease homologue
AB PF00565 SNaseStaphylococcal nuclease homologue
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.50.90 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) OB fold (Dihydrolipoamide Acetyltransferase, E2P) 1sndA00
2.40.50.90 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) OB fold (Dihydrolipoamide Acetyltransferase, E2P) 1sndB00
1SNDAB
chains in the LinkProt database with same CATH superfamily
1ASYAB 1Y8PAB 1Y8NAB 1ASZAB 1Y8OAB 1SNDAB
chains in the LinkProt database with same CATH topology
1Y8PAB 1Y8NAB 1Y8OAB 1SNDAB
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 1SND AB; 
#chains in the LinkProt database with same CATH topology
 1ASY AB;  1Y8P AB;  1Y8N AB;  1ASZ AB;  1Y8O AB;  1SND AB; 
#chains in the LinkProt database with same CATH homology
 1Y8P AB;  1Y8N AB;  1Y8O AB;  1SND AB; 
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#similar chains in the LinkProt database (?% sequence similarity)
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#similar chains, but unlinked
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#similar chains in the pdb database (?% sequence similarity)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling