1P3QQRV

Mechanism of ubiquitin recognition by the cue domain of vps9
Warning
  • Temporary problem with connection to RCSB web service - similar chains cannot be displayed.
  • Temporary problem with connection to RCSB web service - similar chains cannot be displayed.
  • Temporary problem with connection to RCSB web service - similar chains cannot be displayed.
Q: 437-440
Link type Probability Chain Q piercings Chain R piercings Chain V piercings
view details
Unlink Unlink 29% +418R -452R
view details
Unlink Unlink 29% +418R -452R
view details
Unlink Unlink 29% +418R -452R
view details
Unlink Unlink 29% +418R -452R
view details
Unlink Unlink 29% +418R -452R
view details
Unlink Unlink 29% +418R -452R
view details
Unlink Unlink 29% +418R -452R
view details
Unlink Unlink 29% +418R -452R
view details
Unlink Unlink 29% +418R -452R
view details
Unlink Unlink 29% +418R -452R
view details
Unlink Unlink 29% +418R -452R
Interpreting sequences
Chain Q Sequence
SSLIKKIEENERKDTLNTLQNMFPDMDPSLIEDVCIAAAS--GPCVD
Chain Q Sequence
LQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLSE
Chain Q Sequence
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
sequence length 47,36,73
structure length 45,36,73
publication title Mechanism of Ubiquitin Recognition by the CUE Domain of Vps9p.
pubmed doi rcsb
molecule tags Translation
molecule keywords Vacuolar protein sorting-associated protein VPS9
source organism Saccharomyces cerevisiae
missing residues Q: 437-440
pdb deposition date2003-04-18
LinkProt deposition date2016-10-22

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
QRV PF02845 CUECUE domain
QRV PF02845 CUECUE domain
QRV PF00240 ubiquitinUbiquitin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.8.10 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein; domain 3 DNA helicase RuvA subunit, C-terminal domain 1p3qQ00
3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 1p3qV00
2G45ABDE 2G45ADE 2G45ABE 2G45AE 2G45DE 2G45ABD 1P3QQV 1AARAB 2G45AB 1P3QRV 2G45BDE 1P3QQR 1P3QQRV 2G45BD
chains in the LinkProt database with same CATH superfamily
1K50AC 1K50BD 1Q10AB 2G45AB 1K50ACD 1K50BC 1P3QQRV 1K50AD 3DZDAB 1K50ABCD 1K50AB 1K50ABD 2G45DE 2G45BDE 1K50CD 2G45ABD 2G45ADE 2G45AE 1AARAB 1P3QRV 2HJ1AB 1K50ABC 2G45ABE 1K50BCD 1P3QQV 2G45ABDE 1P3QQR 2G45BD
chains in the LinkProt database with same CATH topology
2G45ABDE 2G45ADE 2G45ABE 2G45AE 2G45DE 2G45ABD 1P3QQV 1AARAB 2G45AB 1P3QRV 2G45BDE 1P3QQR 1P3QQRV 2G45BD
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 2G45 ABDE;  2G45 ADE;  2G45 ABE;  2G45 AE;  2G45 DE;  2G45 ABD;  1P3Q QV;  1AAR AB;  2G45 AB;  1P3Q RV;  2G45 BDE;  1P3Q QR;  1P3Q QRV;  2G45 BD; 
#chains in the LinkProt database with same CATH topology
 1K50 AC;  1K50 BD;  1Q10 AB;  2G45 AB;  1K50 ACD;  1K50 BC;  1P3Q QRV;  1K50 AD;  3DZD AB;  1K50 ABCD;  1K50 AB;  1K50 ABD;  2G45 DE;  2G45 BDE;  1K50 CD;  2G45 ABD;  2G45 ADE;  2G45 AE;  1AAR AB;  1P3Q RV;  2HJ1 AB;  1K50 ABC;  2G45 ABE;  1K50 BCD;  1P3Q QV;  2G45 ABDE;  1P3Q QR;  2G45 BD; 
#chains in the LinkProt database with same CATH homology
 2G45 ABDE;  2G45 ADE;  2G45 ABE;  2G45 AE;  2G45 DE;  2G45 ABD;  1P3Q QV;  1AAR AB;  2G45 AB;  1P3Q RV;  2G45 BDE;  1P3Q QR;  1P3Q QRV;  2G45 BD; 
Warning
  • This is a unique chain - no homologues found.


 
            
               
               
           

LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling