2G45BD

Co-crystal structure of znf ubp domain from the deubiquitinating enzyme isopeptidase t (isot) in complex with ubiquitin
Link type Probability Chain B piercings Chain D piercings
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Unlink Unlink 78% -48B +76B
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Unlink Unlink 78% -48B +76B
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Unlink Unlink 78% -48B +76B
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Unlink Unlink 78% -48B +76B
view details
Unlink Unlink 78% -48B +76B
view details
Unlink Unlink 78% -48B +76B
view details
Unlink Unlink 78% -48B +76B
Interpreting sequences
Chain B Sequence
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Chain B Sequence
VRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKT
sequence length 76,117
structure length 76,117
publication title The Ubiquitin Binding Domain ZnF UBP Recognizes the C-Terminal Diglycine Motif of Unanchored Ubiquitin.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Ubiquitin carboxyl-terminal hydrolase 5
source organism Homo sapiens
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date2006-02-21
LinkProt deposition date2016-10-30

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
BD PF00240 ubiquitinUbiquitin family
BD PF02148 zf-UBPZn-finger in ubiquitin-hydrolases and other protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 2g45B00
2G45ABDE 2G45ADE 2G45ABE 2G45AE 2G45DE 2G45ABD 1P3QQV 1AARAB 2G45AB 1P3QRV 2G45BD 1P3QQRV 2G45BDE
chains in the LinkProt database with same CATH superfamily
1K50AC 1K50BD 1Q10AB 2G45AB 1K50ACD 1K50BC 1P3QQRV 1K50AD 1K50ABCD 1K50AB 1K50ABD 2G45DE 2G45BDE 1K50CD 2G45ABD 2G45ADE 2G45AE 1AARAB 1P3QRV 2HJ1AB 1K50ABC 2G45ABE 1K50BCD 1P3QQV 2G45ABDE 2G45BD
chains in the LinkProt database with same CATH topology
2G45ABDE 2G45ADE 2G45ABE 2G45AE 2G45DE 2G45ABD 1P3QQV 1AARAB 2G45AB 1P3QRV 2G45BD 1P3QQRV 2G45BDE
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 2G45 ABDE;  2G45 ADE;  2G45 ABE;  2G45 AE;  2G45 DE;  2G45 ABD;  1P3Q QV;  1AAR AB;  2G45 AB;  1P3Q RV;  2G45 BD;  1P3Q QRV;  2G45 BDE; 
#chains in the LinkProt database with same CATH topology
 1K50 AC;  1K50 BD;  1Q10 AB;  2G45 AB;  1K50 ACD;  1K50 BC;  1P3Q QRV;  1K50 AD;  1K50 ABCD;  1K50 AB;  1K50 ABD;  2G45 DE;  2G45 BDE;  1K50 CD;  2G45 ABD;  2G45 ADE;  2G45 AE;  1AAR AB;  1P3Q RV;  2HJ1 AB;  1K50 ABC;  2G45 ABE;  1K50 BCD;  1P3Q QV;  2G45 ABDE;  2G45 BD; 
#chains in the LinkProt database with same CATH homology
 2G45 ABDE;  2G45 ADE;  2G45 ABE;  2G45 AE;  2G45 DE;  2G45 ABD;  1P3Q QV;  1AAR AB;  2G45 AB;  1P3Q RV;  2G45 BD;  1P3Q QRV;  2G45 BDE; 
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#similar chains in the LinkProt database (?% sequence similarity)
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#similar chains, but unlinked
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#similar chains in the pdb database (?% sequence similarity)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling