1L5EAB

The domain-swapped dimer of cv-n in solution
Link type Probability Chain A piercings Chain B piercings
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
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Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
view details
Hopf.2 Hopf.2 52% -139B +153B -174B -189B +202B -91A
Interpreting sequences
Chain A Sequence
LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQPSNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIANIDGTLKYE
Chain A Sequence
LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQPSNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIANIDGTLKYE
sequence length 101,101
structure length 101,101
publication title The domain-swapped dimer of cyanovirin-N is in a metastable folded state: reconciliation of X-ray and NMR structures.
pubmed doi rcsb
molecule tags Antiviral protein
molecule keywords Cyanovirin-N
source organism Nostoc ellipsosporum
pdb deposition date2002-03-06
LinkProt deposition date2016-10-21

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
AB PF08881 CVNHCVNH domain
AB PF08881 CVNHCVNH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.60.10 Mainly Beta Roll HIV-inactivating Protein, Cyanovirin-n HIV-inactivating Protein,Cyanovirin-n; 1l5eA00
2.30.60.10 Mainly Beta Roll HIV-inactivating Protein, Cyanovirin-n HIV-inactivating Protein,Cyanovirin-n; 1l5eB00
1L5BAB 1J4VAB 3GXZAB 1L5EAB 3GXYAB
chains in the LinkProt database with same CATH superfamily
1L5BAB 1J4VAB 3GXZAB 1L5EAB 3GXYAB
chains in the LinkProt database with same CATH topology
1L5BAB 1J4VAB 3GXZAB 1L5EAB 3GXYAB
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 1L5B AB;  1J4V AB;  3GXZ AB;  1L5E AB;  3GXY AB; 
#chains in the LinkProt database with same CATH topology
 1L5B AB;  1J4V AB;  3GXZ AB;  1L5E AB;  3GXY AB; 
#chains in the LinkProt database with same CATH homology
 1L5B AB;  1J4V AB;  3GXZ AB;  1L5E AB;  3GXY AB; 
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#similar chains in the LinkProt database (?% sequence similarity)
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#similar chains, but unlinked
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#similar chains in the pdb database (?% sequence similarity)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling