1J4VAB

Cyanovirin-n
Link type Probability Chain A piercings Chain B piercings
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Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
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Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
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Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
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Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
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Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
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Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
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Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
view details
Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
view details
Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
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Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
view details
Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
view details
Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
view details
Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
view details
Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
view details
Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
view details
Hopf.2 Hopf.2 44% -237B +254B -272B -37A +54A -89A
Interpreting sequences
Chain A Sequence
LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQPSNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIANIDGTLKYE
Chain A Sequence
LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQPSNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIANIDGTLKYE
sequence length 101,101
structure length 101,101
publication title Using conjoined rigid body/torsion angle simulated annealing to determine the relative orientation of covalently linked protein domains from dipolar couplings.
pubmed doi rcsb
molecule tags Immune system
molecule keywords CYANOVIRIN-N
source organism Nostoc ellipsosporum
pdb deposition date2001-11-21
LinkProt deposition date2016-10-21

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
AB PF08881 CVNHCVNH domain
AB PF08881 CVNHCVNH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.60.10 Mainly Beta Roll HIV-inactivating Protein, Cyanovirin-n HIV-inactivating Protein,Cyanovirin-n; 1j4vA00
2.30.60.10 Mainly Beta Roll HIV-inactivating Protein, Cyanovirin-n HIV-inactivating Protein,Cyanovirin-n; 1j4vB00
1L5BAB 1J4VAB 3GXZAB 1L5EAB 3GXYAB
chains in the LinkProt database with same CATH superfamily
1L5BAB 1J4VAB 3GXZAB 1L5EAB 3GXYAB
chains in the LinkProt database with same CATH topology
1L5BAB 1J4VAB 3GXZAB 1L5EAB 3GXYAB
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 1L5B AB;  1J4V AB;  3GXZ AB;  1L5E AB;  3GXY AB; 
#chains in the LinkProt database with same CATH topology
 1L5B AB;  1J4V AB;  3GXZ AB;  1L5E AB;  3GXY AB; 
#chains in the LinkProt database with same CATH homology
 1L5B AB;  1J4V AB;  3GXZ AB;  1L5E AB;  3GXY AB; 
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#similar chains in the LinkProt database (?% sequence similarity)
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#similar chains, but unlinked
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#similar chains in the pdb database (?% sequence similarity)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling