| Link type | Probability | Chain A piercings | Chain B piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
| view details |
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Unlink | 53% | +105B -160B | -55A +161A | ||||||||
Chain A Sequence |
GMRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQ--------------------------KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK |
Chain A Sequence |
GMRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEA----------------------------KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK |
| sequence length | 146,146 |
| structure length | 130,128 |
| publication title |
Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility.
pubmed rcsb |
| molecule tags | Transcription/dna |
| molecule keywords | CONSENSUS DNA 25-MER |
| source organism | Rattus norvegicus |
| missing residues | A: 76-103 B: 74-103 |
| pdb deposition date | 1997-09-12 |
| LinkProt deposition date | 2016-08-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| AB | PF00046 | Homeobox | Homeobox domain |
| AB | PF00157 | Pou | Pou domain - N-terminal to homeobox domain |
| AB | PF00046 | Homeobox | Homeobox domain |
| AB | PF00157 | Pou | Pou domain - N-terminal to homeobox domain |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | ||
| Mainly Alpha | Orthogonal Bundle | 434 Repressor (Amino-terminal Domain) | lambda repressor-like DNA-binding domains | ||
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | ||
| Mainly Alpha | Orthogonal Bundle | 434 Repressor (Amino-terminal Domain) | lambda repressor-like DNA-binding domains |
#chains in the LinkProt database with same CATH superfamily 1AU7 AB; #chains in the LinkProt database with same CATH topology 1XCB CEG; 3DKW FIJ; 1XCB ACEF; 1XCB ADEF; 3DKW BIJ; 3DKW EFH; 3DKW CDE; 1XCB ABEF; 3DKW EG; 3DKW EIJ; 3DKW EHJ; 1XCB BCDG; 1XCB ABDF; 3DKW CE; 3DKW DI; 1XCB ABF; 1XCB DE; 1XCB CDEG; 3DKW DGH; 3DKW BEH; 1XCB CDE; 1XCB ACFG; 1XCB ABDE; 3DKW ABD; 1XCB BDEG; 1XCB AEFG; 1XCB AB; 1XCB DF; 3DKW AIJ; 1XCB AEF; 1XCB BE; 1XCB ACDG; 3DKW BDI; 1XCB BEG; 1XCB ACE; 1XCB EF; 1XCB CEFG; 1XCB BCE; 1XCB BCEG; 3DKW CIJ; 1XCB CEF; 3DKW CDJ; 3DKW BD; 1XCB ADEG; 3DKW BI; 1AU7 AB; 3DKW GHJ; 1XCB ABCG; 3DKW BCD; 3DKW FGH; 3DKW CEH; 3DKW CDI; 3DKW AGH; 3DKW BC; 1XCB ABEG; 3DKW EH; 3DKW GH; 3DKW GHI; 3DKW CEF; 1XCB CE; 3DKW DIJ; 3DKW FH; 1XCB AF; 1XCB DEF; 1XCB CDF; 3DKW EHI; 3DKW CH; 1XCB BCDE; 3DKW HIJ; 3DKW ABC; 3DKW ABG; 1XCB BDEF; 1XCB AFG; 1XCB AE; 1XCB ABFG; 3DKW DEF; 3DKW ABJ; 1XCB BEFG; 1XCB ACDE; 3DKW EFJ; 3DKW DEH; 3DKW EFG; 1XCB ACG; 3DKW ABI; 3DKW CDG; 3DKW CEI; 1XCB ADFG; 3DKW CGH; 3DKW CDH; 3DKW CFI; 1XCB ACEG; 3DKW EGH; 3DKW EFI; 3DKW AEF; 1XCB ABCE; 3DKW AB; 1XCB CDFG; 1XCB CD; 1XCB ABG; 3DKW EF; 1XCB CDG; 3DKW CI; 1XCB BDE; 3DKW CD; 2DI3 AB; 3DKW ABF; 1XCB CG; 3DKW IJ; 1XCB ABE; 1XCB CDEF; 1XCB BG; 3DKW BGH; 3DKW CJ; 3DKW BEF; 1XCB ADE; 3DKW ACD; 3DKW AEH; 1XCB BCG; 3DKW ABE; 3DKW CHI; 1XCB AEG; 1XCB AG; 1XCB ACDF; 3DKW BDH; 1XCB BEF; 3DKW HI; 1XCB ADF; 3DKW ACI; 3DKW ABH; 3DKW CDF; 1XCB BCEF; #chains in the LinkProt database with same CATH homology 1AU7 AB;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
