| Link type | Probability | Chain A piercings | Chain B piercings | Chain C piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
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Solomon.4 U Ring | 24% | +374B -389B +425B -635B +657B +672B +23C +268C -331C +346C -359C +374C | ||||||||||
Chain A Sequence |
PARPAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFTAANFEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV |
Chain A Sequence |
PARPAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFTAANFEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV |
Chain A Sequence |
PARPAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFTAANFEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV |
| sequence length | 655,655,655 |
| structure length | 655,655,655 |
| publication title |
Crystallographic study of yeast copper amine oxidase.
pubmed doi rcsb |
| molecule tags | Amine oxidase |
| molecule keywords | METHYLAMINE OXIDASE |
| source organism | Pichia angusta |
| ec nomenclature |
ec 1.4.3.21: Primary-amine oxidase. ec 1.4.3.21: Primary-amine oxidase. ec 1.4.3.21: Primary-amine oxidase. |
| pdb deposition date | 1998-01-12 |
| LinkProt deposition date | 2016-08-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| ABC | PF01179 | Cu_amine_oxid | Copper amine oxidase, enzyme domain |
| ABC | PF02727 | Cu_amine_oxidN2 | Copper amine oxidase, N2 domain |
| ABC | PF02728 | Cu_amine_oxidN3 | Copper amine oxidase, N3 domain |
| ABC | PF01179 | Cu_amine_oxid | Copper amine oxidase, enzyme domain |
| ABC | PF02727 | Cu_amine_oxidN2 | Copper amine oxidase, N2 domain |
| ABC | PF02728 | Cu_amine_oxidN3 | Copper amine oxidase, N3 domain |
| ABC | PF01179 | Cu_amine_oxid | Copper amine oxidase, enzyme domain |
| ABC | PF02727 | Cu_amine_oxidN2 | Copper amine oxidase, N2 domain |
| ABC | PF02728 | Cu_amine_oxidN3 | Copper amine oxidase, N3 domain |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Distorted Sandwich | Beta-galactosidase; Chain A, domain 5 | Copper amine oxidase, Domain 3 | ||
| Alpha Beta | Roll | Nuclear Transport Factor 2; Chain: A, | Nuclear Transport Factor 2; Chain: A, | ||
| Alpha Beta | Roll | Nuclear Transport Factor 2; Chain: A, | Nuclear Transport Factor 2; Chain: A, | ||
| Mainly Beta | Distorted Sandwich | Beta-galactosidase; Chain A, domain 5 | Copper amine oxidase, Domain 3 | ||
| Alpha Beta | Roll | Nuclear Transport Factor 2; Chain: A, | Nuclear Transport Factor 2; Chain: A, | ||
| Alpha Beta | Roll | Nuclear Transport Factor 2; Chain: A, | Nuclear Transport Factor 2; Chain: A, | ||
| Mainly Beta | Distorted Sandwich | Beta-galactosidase; Chain A, domain 5 | Copper amine oxidase, Domain 3 | ||
| Alpha Beta | Roll | Nuclear Transport Factor 2; Chain: A, | Nuclear Transport Factor 2; Chain: A, | ||
| Alpha Beta | Roll | Nuclear Transport Factor 2; Chain: A, | Nuclear Transport Factor 2; Chain: A, |
#chains in the LinkProt database with same CATH superfamily 1A2V BEF; 1A2V CEF; 1A2V CD; 1A2V ABC; 1A2V CDF; 1A2V AEF; 1A2V CDE; 3ALA FG; 1A2V EF; 1A2V AB; 1A2V BCD; 1A2V ABE; 1A2V DEF; 1A2V ABD; 1A2V ACD; 1A2V ABF; #chains in the LinkProt database with same CATH topology 1R4C ACGH; 1R4C BCE; 1R4C ADEF; 1R4C ABEH; 1R4C EF; 1R4C ACDH; 1R4C BEG; 1R4C CDG; 1R4C BF; 1R4C ACDG; 1R4C CEGH; 1R4C BCEF; 1R4C BCF; 1R4C ABFG; 1A2V ABE; 1R4C BCDG; 1R4C ACEH; 1R4C BC; 1R4C ADE; 1R4C AH; 1R4C CFGH; 1R4C AFG; 3DMC AB; 1R4C FGH; 1R4C ABCD; 1R4C CDGH; 1R4C AEH; 1R4C BDG; 1R4C ABE; 1A2V ABF; 1R4C FG; 1A2V CEF; 1R4C BGH; 1R4C ABDE; 1A2V EF; 1R4C CEG; 1R4C ACF; 1R4C EGH; 1A2V ABC; 1R4C BFH; 1R4C BEFH; 1R4C BCGH; 1R4C ACEF; 1R4C ABDH; 1R4C AE; 1R4C ADGH; 1R4C ABEF; 1R4C AC; 1R4C ACE; 1R4C ADEG; 1R4C DEG; 1R4C AFGH; 3ALA FG; 1R4C BCDH; 1R4C BG; 1R4C ABFH; 1R4C AD; 1R4C DFG; 1A2V BEF; 1R4C BCG; 1R4C ACFH; 1R4C ACH; 1A2V BCD; 1R4C BDH; 1R4C BCDF; 1R4C ADFG; 1R4C ADF; 1R4C ABF; 1R4C ABCE; 1R4C BDEG; 1R4C CDFG; 1R4C ABG; 1R4C AEG; 1R4C BDF; 1R4C ABCH; 1R4C AEFH; 1R4C BEGH; 1R4C DFGH; 1R4C AEFG; 1R4C BCFH; 1R4C BFGH; 1R4C ABCF; 1R4C CD; 1R4C CEFG; 1R4C AFH; 1R4C BCEH; 1R4C ADFH; 1R4C BCH; 1A2V AB; 1R4C ABDG; 1R4C BCFG; 1R4C BDEH; 1R4C BH; 1R4C ABEG; 1R4C ACD; 1R4C BD; 1R4C ACDE; 1R4C AG; 1R4C CGH; 1R4C FH; 1R4C CDEG; 1R4C BEFG; 1R4C EFH; 1A2V CD; 1R4C EFG; 1R4C BCD; 1A2V AEF; 1R4C EG; 1R4C BCDE; 1R4C BEF; 1N9J AB; 1R4C EFGH; 1R4C ACDF; 1R4C ABD; 1R4C ADG; 1R4C AF; 1R4C AGH; 1R4C BDFG; 1R4C DG; 1R4C BDEF; 1R4C AEF; 1R4C BDE; 1R4C ABC; 1R4C BEH; 1R4C BDGH; 1A2V ABD; 1R4C BFG; 1A2V CDE; 1R4C AEGH; 1R4C ABH; 1R4C ABCG; 1R4C CG; 1A2V DEF; 1R4C DEGH; 1R4C EH; 1A2V ACD; 1R4C ACEG; 1R4C ADH; 1A2V CDF; 1R4C BCEG; 1R4C DGH; 1R4C ABDF; 1R4C ACG; 1R4C ADEH; 1R4C CFG; 1R4C ABGH; 1R4C GH; 1R4C BE; 1R4C AB; 1R4C BDFH; 1R4C ACFG; 1R4C DEFG; #chains in the LinkProt database with same CATH homology 1R4C ACGH; 1R4C BCE; 1R4C ADEF; 1R4C ABEH; 1R4C EF; 1R4C ACDH; 1R4C BEG; 1R4C CDG; 1R4C BF; 1R4C ACDG; 1R4C CEGH; 1R4C BCEF; 1R4C BCF; 1R4C ABFG; 1A2V ABE; 1R4C BCDG; 1R4C ACEH; 1R4C BC; 1R4C ADE; 1R4C AH; 1R4C CFGH; 1R4C AFG; 3DMC AB; 1R4C FGH; 1R4C ABCD; 1R4C CDGH; 1R4C AEH; 1R4C BDG; 1R4C ABE; 1A2V ABF; 1R4C FG; 1A2V CEF; 1R4C BGH; 1R4C ABDE; 1A2V EF; 1R4C CEG; 1R4C ACF; 1R4C EGH; 1A2V ABC; 1R4C BFH; 1R4C BEFH; 1R4C BCGH; 1R4C ACEF; 1R4C ABDH; 1R4C AE; 1R4C ADGH; 1R4C ABEF; 1R4C AC; 1R4C ACE; 1R4C ADEG; 1R4C DEG; 1R4C AFGH; 3ALA FG; 1R4C BCDH; 1R4C BG; 1R4C ABFH; 1R4C AD; 1R4C DFG; 1A2V BEF; 1R4C BCG; 1R4C ACFH; 1R4C ACH; 1A2V BCD; 1R4C BDH; 1R4C BCDF; 1R4C ADFG; 1R4C ADF; 1R4C ABF; 1R4C ABCE; 1R4C BDEG; 1R4C CDFG; 1R4C ABG; 1R4C AEG; 1R4C BDF; 1R4C ABCH; 1R4C AEFH; 1R4C BEGH; 1R4C DFGH; 1R4C AEFG; 1R4C BCFH; 1R4C BFGH; 1R4C ABCF; 1R4C CD; 1R4C CEFG; 1R4C AFH; 1R4C BCEH; 1R4C ADFH; 1R4C BCH; 1A2V AB; 1R4C ABDG; 1R4C BCFG; 1R4C BDEH; 1R4C BH; 1R4C ABEG; 1R4C ACD; 1R4C BD; 1R4C ACDE; 1R4C AG; 1R4C CGH; 1R4C FH; 1R4C CDEG; 1R4C BEFG; 1R4C EFH; 1A2V CD; 1R4C EFG; 1R4C BCD; 1A2V AEF; 1R4C EG; 1R4C BCDE; 1R4C BEF; 1N9J AB; 1R4C EFGH; 1R4C ACDF; 1R4C ABD; 1R4C ADG; 1R4C AF; 1R4C AGH; 1R4C BDFG; 1R4C DG; 1R4C BDEF; 1R4C AEF; 1R4C BDE; 1R4C ABC; 1R4C BEH; 1R4C BDGH; 1A2V ABD; 1R4C BFG; 1A2V CDE; 1R4C AEGH; 1R4C ABH; 1R4C ABCG; 1R4C CG; 1A2V DEF; 1R4C DEGH; 1R4C EH; 1A2V ACD; 1R4C ACEG; 1R4C ADH; 1A2V CDF; 1R4C BCEG; 1R4C DGH; 1R4C ABDF; 1R4C ACG; 1R4C ADEH; 1R4C CFG; 1R4C ABGH; 1R4C GH; 1R4C BE; 1R4C AB; 1R4C BDFH; 1R4C ACFG; 1R4C DEFG;
#similar chains in the pdb database (40% sequence similarity)
3SXX_A; 3SXX_B; 3SXX_C; 3SXX_D; 3SXX_E; 3SXX_F; 2OQE_A; 2OQE_B; 2OQE_C; 2OQE_D; 2OQE_E; 2OQE_F; 4KFD_A; 4KFD_B; 4KFD_C; 4KFD_D; 4KFD_E; 4KFD_F; 3SX1_A; 3SX1_B; 3SX1_C; 2OOV_A; 2OOV_B; 2OOV_C; 2OOV_D; 2OOV_E; 2OOV_F; 3T0U_A; 3T0U_B; 3T0U_C; 4KFE_A; 4KFE_B; 4KFE_C; 4KFE_D; 4KFE_E; 4KFE_F; 4KFF_A; 4KFF_B; 4KFF_C; 3NBJ_A; 3NBJ_B; 3NBJ_C; 3NBJ_D; 3NBJ_E; 3NBJ_F; 4EV2_A; 4EV2_B; 4EV2_C; 4EV2_D; 4EV2_E; 4EV2_F; 3NBB_A; 3NBB_B; 3NBB_C; 3NBB_D; 3NBB_E; 3NBB_F; 4EV5_A; 4EV5_B; 4EV5_C; 4EV5_D; 4EV5_E; 4EV5_F; 1A2V_B; 1A2V_C; 1A2V_D; 1A2V_E; 1A2V_F; 1EKM_A; 1EKM_B; 1EKM_C; 3N9H_A; 3N9H_B; 3N9H_C; 3N9H_D; 3N9H_E; 3N9H_F; 3SXX_A; 3SXX_B; 3SXX_C; 3SXX_D; 3SXX_E; 3SXX_F; 2OQE_A; 2OQE_B; 2OQE_C; 2OQE_D; 2OQE_E; 2OQE_F; 4KFD_A; 4KFD_B; 4KFD_C; 4KFD_D; 4KFD_E; 4KFD_F; 3SX1_A; 3SX1_B; 3SX1_C; 2OOV_A; 2OOV_B; 2OOV_C; 2OOV_D; 2OOV_E; 2OOV_F; 3T0U_A; 3T0U_B; 3T0U_C; 4KFE_A; 4KFE_B; 4KFE_C; 4KFE_D; 4KFE_E; 4KFE_F; 4KFF_A; 4KFF_B; 4KFF_C; 3NBJ_A; 3NBJ_B; 3NBJ_C; 3NBJ_D; 3NBJ_E; 3NBJ_F; 4EV2_A; 4EV2_B; 4EV2_C; 4EV2_D; 4EV2_E; 4EV2_F; 3NBB_A; 3NBB_B; 3NBB_C; 3NBB_D; 3NBB_E; 3NBB_F; 4EV5_A; 4EV5_B; 4EV5_C; 4EV5_D; 4EV5_E; 4EV5_F; 1A2V_A; 1A2V_C; 1A2V_D; 1A2V_E; 1A2V_F; 1EKM_A; 1EKM_B; 1EKM_C; 3N9H_A; 3N9H_B; 3N9H_C; 3N9H_D; 3N9H_E; 3N9H_F; 3SXX_A; 3SXX_B; 3SXX_C; 3SXX_D; 3SXX_E; 3SXX_F; 2OQE_A; 2OQE_B; 2OQE_C; 2OQE_D; 2OQE_E; 2OQE_F; 4KFD_A; 4KFD_B; 4KFD_C; 4KFD_D; 4KFD_E; 4KFD_F; 3SX1_A; 3SX1_B; 3SX1_C; 2OOV_A; 2OOV_B; 2OOV_C; 2OOV_D; 2OOV_E; 2OOV_F; 3T0U_A; 3T0U_B; 3T0U_C; 4KFE_A; 4KFE_B; 4KFE_C; 4KFE_D; 4KFE_E; 4KFE_F; 4KFF_A; 4KFF_B; 4KFF_C; 3NBJ_A; 3NBJ_B; 3NBJ_C; 3NBJ_D; 3NBJ_E; 3NBJ_F; 4EV2_A; 4EV2_B; 4EV2_C; 4EV2_D; 4EV2_E; 4EV2_F; 3NBB_A; 3NBB_B; 3NBB_C; 3NBB_D; 3NBB_E; 3NBB_F; 4EV5_A; 4EV5_B; 4EV5_C; 4EV5_D; 4EV5_E; 4EV5_F; 1A2V_A; 1A2V_B; 1A2V_D; 1A2V_E; 1A2V_F; 1EKM_A; 1EKM_B; 1EKM_C; 3N9H_A; 3N9H_B; 3N9H_C; 3N9H_D; 3N9H_E; 3N9H_F;