3JZ4BD

Crystal structure of e. coli nadp dependent enzyme
Link type Probability Chain B piercings Chain D piercings
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
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Unlink Unlink 47% -126B +146B -240B +251B -472B +482B
Interpreting sequences
Chain B Sequence
KLNDSNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIGL
Chain B Sequence
KLNDSNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIGL
sequence length 481,481
structure length 481,481
publication title The X-ray crystal structure of Escherichia coli succinic semialdehyde dehydrogenase; structural insights into NADP+/enzyme interactions.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Succinate-semialdehyde dehydrogenase [NADP+]
source organism Escherichia coli
ec nomenclature ec 1.2.1.79: Succinate-semialdehyde dehydrogenase (NADP(+)).
ec 1.2.1.79: Succinate-semialdehyde dehydrogenase (NADP(+)).
pdb deposition date2009-09-22
LinkProt deposition date2016-08-17

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
BD PF00171 AldedhAldehyde dehydrogenase family
BD PF00171 AldedhAldehyde dehydrogenase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.309.10 Alpha Beta 3-Layer(aba) Sandwich Aldehyde Dehydrogenase; Chain A, domain 2 Aldehyde Dehydrogenase; Chain A, domain 2 3jz4B02
3.40.605.10 Alpha Beta 3-Layer(aba) Sandwich Aldehyde Dehydrogenase; Chain A, domain 1 Aldehyde Dehydrogenase; Chain A, domain 1 3jz4B01
3.40.309.10 Alpha Beta 3-Layer(aba) Sandwich Aldehyde Dehydrogenase; Chain A, domain 2 Aldehyde Dehydrogenase; Chain A, domain 2 3jz4D02
3.40.605.10 Alpha Beta 3-Layer(aba) Sandwich Aldehyde Dehydrogenase; Chain A, domain 1 Aldehyde Dehydrogenase; Chain A, domain 1 3jz4D01
1A4SAD 1A4SBCD 3JZ4AB 1A4SAB 3JZ4ABD 1A4SACD 1A4SBD 1A4SBC 3JZ4BC 3JZ4ACD 1A4SAC 3JZ4BD 1A4SABC 3JZ4CD 3JZ4AC 3JZ4BCD 3JZ4ABC 1A4SABD 1A4SCD
chains in the LinkProt database with same CATH superfamily
1A4SAD 1A4SBCD 3JZ4AB 1A4SAB 3JZ4ABD 1A4SACD 1A4SBD 1A4SBC 3JZ4BC 3JZ4ACD 1A4SAC 3JZ4BD 1A4SABC 3JZ4CD 3JZ4AC 3JZ4BCD 3JZ4ABC 1A4SABD 1A4SCD
chains in the LinkProt database with same CATH topology
1A4SAD 1A4SBCD 3JZ4AB 1A4SAB 3JZ4ABD 1A4SACD 1A4SBD 1A4SBC 3JZ4BC 3JZ4ACD 1A4SAC 3JZ4BD 1A4SABC 3JZ4CD 3JZ4AC 3JZ4BCD 3JZ4ABC 1A4SABD 1A4SCD
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 1A4S AD;  1A4S BCD;  3JZ4 AB;  1A4S AB;  3JZ4 ABD;  1A4S ACD;  1A4S BD;  1A4S BC;  3JZ4 BC;  3JZ4 ACD;  1A4S AC;  3JZ4 BD;  1A4S ABC;  3JZ4 CD;  3JZ4 AC;  3JZ4 BCD;  3JZ4 ABC;  1A4S ABD;  1A4S CD; 
#chains in the LinkProt database with same CATH topology
 1A4S AD;  1A4S BCD;  3JZ4 AB;  1A4S AB;  3JZ4 ABD;  1A4S ACD;  1A4S BD;  1A4S BC;  3JZ4 BC;  3JZ4 ACD;  1A4S AC;  3JZ4 BD;  1A4S ABC;  3JZ4 CD;  3JZ4 AC;  3JZ4 BCD;  3JZ4 ABC;  1A4S ABD;  1A4S CD; 
#chains in the LinkProt database with same CATH homology
 1A4S AD;  1A4S BCD;  3JZ4 AB;  1A4S AB;  3JZ4 ABD;  1A4S ACD;  1A4S BD;  1A4S BC;  3JZ4 BC;  3JZ4 ACD;  1A4S AC;  3JZ4 BD;  1A4S ABC;  3JZ4 CD;  3JZ4 AC;  3JZ4 BCD;  3JZ4 ABC;  1A4S ABD;  1A4S CD; 
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#similar chains in the LinkProt database (?% sequence similarity)
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#similar chains, but unlinked
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#similar chains in the pdb database (?% sequence similarity)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling