| Link type | Probability | Chain C piercings | Chain D piercings | Chain E piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
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Hopf.1 U Ring | 34% | +67D -142D +158D +16E | -161C +175C -236C +246C | |||||||||
Chain C Sequence |
QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGQSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT |
Chain C Sequence |
GLFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQIKG |
Chain C Sequence |
QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGQSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT |
| sequence length | 328,175,328 |
| structure length | 328,175,328 |
| publication title |
Refinement of the influenza virus hemagglutinin by simulated annealing.
pubmed doi rcsb |
| molecule tags | Viral protein |
| molecule keywords | HEMAGGLUTININ |
| source organism | Influenza a virus |
| pdb deposition date | 1989-09-11 |
| LinkProt deposition date | 2016-08-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| CDE | PF00509 | Hemagglutinin | Haemagglutinin |
| CDE | PF00509 | Hemagglutinin | Haemagglutinin |
| CDE | PF00509 | Hemagglutinin | Haemagglutinin |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Hemagglutinin (Ha1 Chain); Chain: A; domain 1 | Hemagglutinin (Ha1 Chain); Chain: A; domain 1 | ||
| Alpha Beta | Alpha-Beta Complex | Hemagglutinin Ectodomain; Chain B | Hemagglutinin Ectodomain; Chain B | ||
| Alpha Beta | Alpha-Beta Complex | Hemagglutinin (Ha1 Chain); Chain: A; domain 1 | Hemagglutinin (Ha1 Chain); Chain: A; domain 1 |
#chains in the LinkProt database with same CATH superfamily 3HMG DEF; 3HMG BDF; 3HMG ABF; 3HMG CF; 3HMG BD; 3HMG CEF; 3HMG AC; 3HMG BC; 3HMG ADF; 3HMG DE; 3HMG AE; 3HMG ABE; 3HMG ACD; 3HMG DF; 3HMG CDF; 3HMG AB; 3HMG BCF; 3HMG ABD; 3HMG ADE; 3HMG BDE; 3HMG CDE; 3HMG CD; 3HMG BF; 3HMG BCE; 3HMG EF; 3HMG ACF; 3HMG BEF; 3HMG AF; 3HMG CE; 3HMG BE; 3HMG AD; 3HMG BCD; 3HMG ABC; 3HMG AEF; #chains in the LinkProt database with same CATH topology 3HMG DEF; 3HMG BDF; 3HMG ABF; 3HMG CF; 3HMG BD; 3HMG CEF; 3HMG AC; 3HMG BC; 3HMG ADF; 3HMG DE; 3HMG AE; 3HMG ABE; 3HMG ACD; 3HMG DF; 3HMG CDF; 3HMG AB; 3HMG BCF; 3HMG ABD; 3HMG ADE; 3HMG BDE; 3HMG CDE; 3HMG CD; 3HMG BF; 3HMG BCE; 3HMG EF; 3HMG ACF; 3HMG BEF; 3HMG AF; 3HMG CE; 3HMG BE; 3HMG AD; 3HMG BCD; 3HMG ABC; 3HMG AEF; #chains in the LinkProt database with same CATH homology 3HMG DEF; 3HMG BDF; 3HMG ABF; 3HMG CF; 3HMG BD; 3HMG CEF; 3HMG AC; 3HMG BC; 3HMG ADF; 3HMG DE; 3HMG AE; 3HMG ABE; 3HMG ACD; 3HMG DF; 3HMG CDF; 3HMG AB; 3HMG BCF; 3HMG ABD; 3HMG ADE; 3HMG BDE; 3HMG CDE; 3HMG CD; 3HMG BF; 3HMG BCE; 3HMG EF; 3HMG ACF; 3HMG BEF; 3HMG AF; 3HMG CE; 3HMG BE; 3HMG AD; 3HMG BCD; 3HMG ABC; 3HMG AEF;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
