3HMGAC

Refinement of the influenza virus hemagglutinin by simulated annealing
Link type Probability Chain A piercings Chain C piercings
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
view details
Unlink Unlink 71% -23C +36C -46C +329C
Interpreting sequences
Chain A Sequence
QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGQSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT
Chain A Sequence
QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGQSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT
sequence length 328,328
structure length 328,328
publication title Refinement of the influenza virus hemagglutinin by simulated annealing.
pubmed doi rcsb
molecule tags Viral protein
molecule keywords HEMAGGLUTININ
source organism Influenza a virus
pdb deposition date1989-09-11
LinkProt deposition date2016-08-17

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
AC PF00509 HemagglutininHaemagglutinin
AC PF00509 HemagglutininHaemagglutinin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.209.20 Alpha Beta Alpha-Beta Complex Hemagglutinin (Ha1 Chain); Chain: A; domain 1 Hemagglutinin (Ha1 Chain); Chain: A; domain 1 3hmgA01
3.90.209.20 Alpha Beta Alpha-Beta Complex Hemagglutinin (Ha1 Chain); Chain: A; domain 1 Hemagglutinin (Ha1 Chain); Chain: A; domain 1 3hmgC01
3HMGDEF 3HMGABF 3HMGCF 3HMGCEF 3HMGAC 3HMGBC 3HMGADF 3HMGDE 3HMGAE 3HMGABE 3HMGACD 3HMGCDF 3HMGAB 3HMGBCF 3HMGABD 3HMGADE 3HMGBDE 3HMGCDE 3HMGCD 3HMGBCE 3HMGEF 3HMGACF 3HMGBEF 3HMGAF 3HMGCE 3HMGBE 3HMGAD 3HMGBCD 3HMGABC 3HMGAEF
chains in the LinkProt database with same CATH superfamily
3HMGDEF 3HMGABF 3HMGCF 3HMGCEF 3HMGAC 3HMGBC 3HMGADF 3HMGDE 3HMGAE 3HMGABE 3HMGACD 3HMGCDF 3HMGAB 3HMGBCF 3HMGABD 3HMGADE 3HMGBDE 3HMGCDE 3HMGCD 3HMGBCE 3HMGEF 3HMGACF 3HMGBEF 3HMGAF 3HMGCE 3HMGBE 3HMGAD 3HMGBCD 3HMGABC 3HMGAEF
chains in the LinkProt database with same CATH topology
3HMGDEF 3HMGABF 3HMGCF 3HMGCEF 3HMGAC 3HMGBC 3HMGADF 3HMGDE 3HMGAE 3HMGABE 3HMGACD 3HMGCDF 3HMGAB 3HMGBCF 3HMGABD 3HMGADE 3HMGBDE 3HMGCDE 3HMGCD 3HMGBCE 3HMGEF 3HMGACF 3HMGBEF 3HMGAF 3HMGCE 3HMGBE 3HMGAD 3HMGBCD 3HMGABC 3HMGAEF
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 3HMG DEF;  3HMG ABF;  3HMG CF;  3HMG CEF;  3HMG AC;  3HMG BC;  3HMG ADF;  3HMG DE;  3HMG AE;  3HMG ABE;  3HMG ACD;  3HMG CDF;  3HMG AB;  3HMG BCF;  3HMG ABD;  3HMG ADE;  3HMG BDE;  3HMG CDE;  3HMG CD;  3HMG BCE;  3HMG EF;  3HMG ACF;  3HMG BEF;  3HMG AF;  3HMG CE;  3HMG BE;  3HMG AD;  3HMG BCD;  3HMG ABC;  3HMG AEF; 
#chains in the LinkProt database with same CATH topology
 3HMG DEF;  3HMG ABF;  3HMG CF;  3HMG CEF;  3HMG AC;  3HMG BC;  3HMG ADF;  3HMG DE;  3HMG AE;  3HMG ABE;  3HMG ACD;  3HMG CDF;  3HMG AB;  3HMG BCF;  3HMG ABD;  3HMG ADE;  3HMG BDE;  3HMG CDE;  3HMG CD;  3HMG BCE;  3HMG EF;  3HMG ACF;  3HMG BEF;  3HMG AF;  3HMG CE;  3HMG BE;  3HMG AD;  3HMG BCD;  3HMG ABC;  3HMG AEF; 
#chains in the LinkProt database with same CATH homology
 3HMG DEF;  3HMG ABF;  3HMG CF;  3HMG CEF;  3HMG AC;  3HMG BC;  3HMG ADF;  3HMG DE;  3HMG AE;  3HMG ABE;  3HMG ACD;  3HMG CDF;  3HMG AB;  3HMG BCF;  3HMG ABD;  3HMG ADE;  3HMG BDE;  3HMG CDE;  3HMG CD;  3HMG BCE;  3HMG EF;  3HMG ACF;  3HMG BEF;  3HMG AF;  3HMG CE;  3HMG BE;  3HMG AD;  3HMG BCD;  3HMG ABC;  3HMG AEF; 
...loading similar chains, please wait...

...loading similar chains in PDB, please wait...


 
#similar chains in the LinkProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unlinked
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling