| Link type | Probability | Chain A piercings | Chain B piercings | Chain C piercings | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
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Unlink | 46% | -113C +176C +283C -338C | ||||||||||
Chain A Sequence |
RILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRDWYPKLW |
Chain A Sequence |
FRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGI |
Chain A Sequence |
KPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELM |
| sequence length | 327,53,120 |
| structure length | 327,53,120 |
| publication title |
Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA
pubmed doi rcsb |
| molecule tags | Isomerase/rna |
| molecule keywords | Pseudouridine synthase Cbf5 |
| source organism | Pyrococcus furiosus |
| ec nomenclature |
ec 5.4.99.25: tRNA pseudouridine(55) synthase. |
| pdb deposition date | 2009-05-22 |
| LinkProt deposition date | 2016-08-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| ABC | PF01472 | PUA | PUA domain |
| ABC | PF01509 | TruB_N | TruB family pseudouridylate synthase (N terminal domain) |
| ABC | PF08068 | DKCLD | DKCLD (NUC011) domain |
| ABC | PF16198 | TruB_C_2 | tRNA pseudouridylate synthase B C-terminal domain |
| ABC | PF04135 | Nop10p | Nucleolar RNA-binding protein, Nop10p family |
| ABC | PF01248 | Ribosomal_L7Ae | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase | ||
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | 60s Ribosomal Protein L30; Chain: A; |
#chains in the LinkProt database with same CATH superfamily 3HJY AB; 3HJW AB; 3HJW ABC; 3HJW BC; #chains in the LinkProt database with same CATH topology 1VH8 CF; 1VH8 AB; 1VH8 CDE; 3HJW BC; 1VH8 ACDE; 1VH8 AC; 1VH8 BCDF; 1VH8 DE; 1VH8 CDEF; 1VH8 BC; 3HJY AB; 1VH8 ACDF; 1W5F AB; 1VH8 BCF; 1VH8 ACE; 1VH8 ACEF; 1VH8 CEF; 1VH8 ABCF; 1VH8 BCE; 1VH8 BCEF; 3HJW ABC; 1VH8 EF; 1VH8 DEF; 1VH8 ACF; 1VH8 BCDE; 1VH8 CE; 1VH8 ABCE; 1VH8 CDF; 1VH8 DF; 1VH8 ABC; 3HJW AB; #chains in the LinkProt database with same CATH homology 1VH8 CF; 1VH8 AB; 1VH8 CDE; 3HJW BC; 1VH8 ACDE; 1VH8 AC; 1VH8 BCDF; 1VH8 DE; 1VH8 CDEF; 1VH8 BC; 3HJY AB; 1VH8 ACDF; 1W5F AB; 1VH8 BCF; 1VH8 ACE; 1VH8 ACEF; 1VH8 CEF; 1VH8 ABCF; 1VH8 BCE; 1VH8 BCEF; 3HJW ABC; 1VH8 EF; 1VH8 DEF; 1VH8 ACF; 1VH8 BCDE; 1VH8 CE; 1VH8 ABCE; 1VH8 CDF; 1VH8 DF; 1VH8 ABC; 3HJW AB;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
