1VH8CDEF

Crystal structure of a 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
C: 63-71 D: 63-71 E: 63-71 F: 63-71
Link type Probability Chain C piercings Chain D piercings Chain E piercings Chain F piercings
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
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Other Other 27% -158D -159E -56E -159F -139F -159F
Interpreting sequences
Chain C Sequence
SLIRIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFP-------NADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCDIEQVNVKATTTEKLGFTGRQEGIACEAVALLIRQ
Chain C Sequence
SLIRIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFP-------NADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCDIEQVNVKATTTEKLGFTGRQEGIACEAVALLIRQ
Chain C Sequence
SLIRIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFP-------NADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCDIEQVNVKATTTEKLGFTGRQEGIACEAVALLIRQ
Chain C Sequence
SLIRIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFP-------NADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCDIEQVNVKATTTEKLGFTGRQEGIACEAVALLIRQ
sequence length 159,159,159,159
structure length 152,152,152,152
publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
molecule tags Lyase
molecule keywords 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
source organism Haemophilus influenzae
missing residues C: 63-71 D: 63-71 E: 63-71 F: 63-71
ec nomenclature ec 4.6.1.12: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
ec 4.6.1.12: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
ec 4.6.1.12: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
ec 4.6.1.12: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
pdb deposition date2003-12-01
LinkProt deposition date2016-10-30

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
CDEF PF02542 YgbBYgbB family
CDEF PF02542 YgbBYgbB family
CDEF PF02542 YgbBYgbB family
CDEF PF02542 YgbBYgbB family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.50 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 60s Ribosomal Protein L30; Chain: A; 1vh8C00
3.30.1330.50 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 60s Ribosomal Protein L30; Chain: A; 1vh8D00
3.30.1330.50 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 60s Ribosomal Protein L30; Chain: A; 1vh8E00
3.30.1330.50 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 60s Ribosomal Protein L30; Chain: A; 1vh8F00
1VH8CF 1VH8AB 1VH8CDE 1VH8ACDE 1VH8AC 1VH8BCDF 1VH8DE 1VH8CDEF 1VH8BC 1VH8ACDF 1VH8BCF 1VH8ACE 1VH8ACEF 1VH8CEF 1VH8ABCF 1VH8BCE 1VH8BCEF 1VH8EF 1VH8DEF 1VH8ACF 1VH8BCDE 1VH8CE 1VH8ABCE 1VH8CDF 1VH8DF 1VH8ABC
chains in the LinkProt database with same CATH superfamily
1VH8CF 1VH8AB 1VH8CDE 3HJWBC 1VH8ACDE 1VH8AC 1VH8BCDF 1VH8DE 1VH8CDEF 1VH8BC 1VH8ACDF 1W5FAB 1VH8BCF 1VH8ACE 1VH8ACEF 1VH8CEF 1VH8ABCF 1VH8BCE 1VH8BCEF 3HJWABC 1VH8EF 1VH8DEF 1VH8ACF 1VH8BCDE 1VH8CE 1VH8ABCE 1VH8CDF 1VH8DF 1VH8ABC
chains in the LinkProt database with same CATH topology
1VH8CF 1VH8AB 1VH8CDE 3HJWBC 1VH8ACDE 1VH8AC 1VH8BCDF 1VH8DE 1VH8CDEF 1VH8BC 1VH8ACDF 1W5FAB 1VH8BCF 1VH8ACE 1VH8ACEF 1VH8CEF 1VH8ABCF 1VH8BCE 1VH8BCEF 3HJWABC 1VH8EF 1VH8DEF 1VH8ACF 1VH8BCDE 1VH8CE 1VH8ABCE 1VH8CDF 1VH8DF 1VH8ABC
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 1VH8 CF;  1VH8 AB;  1VH8 CDE;  1VH8 ACDE;  1VH8 AC;  1VH8 BCDF;  1VH8 DE;  1VH8 CDEF;  1VH8 BC;  1VH8 ACDF;  1VH8 BCF;  1VH8 ACE;  1VH8 ACEF;  1VH8 CEF;  1VH8 ABCF;  1VH8 BCE;  1VH8 BCEF;  1VH8 EF;  1VH8 DEF;  1VH8 ACF;  1VH8 BCDE;  1VH8 CE;  1VH8 ABCE;  1VH8 CDF;  1VH8 DF;  1VH8 ABC; 
#chains in the LinkProt database with same CATH topology
 1VH8 CF;  1VH8 AB;  1VH8 CDE;  3HJW BC;  1VH8 ACDE;  1VH8 AC;  1VH8 BCDF;  1VH8 DE;  1VH8 CDEF;  1VH8 BC;  1VH8 ACDF;  1W5F AB;  1VH8 BCF;  1VH8 ACE;  1VH8 ACEF;  1VH8 CEF;  1VH8 ABCF;  1VH8 BCE;  1VH8 BCEF;  3HJW ABC;  1VH8 EF;  1VH8 DEF;  1VH8 ACF;  1VH8 BCDE;  1VH8 CE;  1VH8 ABCE;  1VH8 CDF;  1VH8 DF;  1VH8 ABC; 
#chains in the LinkProt database with same CATH homology
 1VH8 CF;  1VH8 AB;  1VH8 CDE;  3HJW BC;  1VH8 ACDE;  1VH8 AC;  1VH8 BCDF;  1VH8 DE;  1VH8 CDEF;  1VH8 BC;  1VH8 ACDF;  1W5F AB;  1VH8 BCF;  1VH8 ACE;  1VH8 ACEF;  1VH8 CEF;  1VH8 ABCF;  1VH8 BCE;  1VH8 BCEF;  3HJW ABC;  1VH8 EF;  1VH8 DEF;  1VH8 ACF;  1VH8 BCDE;  1VH8 CE;  1VH8 ABCE;  1VH8 CDF;  1VH8 DF;  1VH8 ABC; 
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#similar chains in the LinkProt database (?% sequence similarity)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling