| Link type | Probability | Chain A piercings | Chain B piercings | Chain C piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
| view details |
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
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Other | 40% | +137B -499B +33C -1078C +1134C -1226C | ||||||||||
Chain A Sequence |
SKFLDRFRYAKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVAALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNQEKALNFLTPHQKWGIHSTYSDNLLMLTLGRGGPVVWLSEADAKDLGIADNDWIEVFNSNGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAHLAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGNDQVQES |
Chain A Sequence |
MKIRSQVGMVLNLDKAIGCHTCSVTCKNVWTSREGVEYAWFNNVETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKNFDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIANYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVTSKTE |
Chain A Sequence |
MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFVGHFFGMLTPHWMAAAWLPIEVKQKMAMFAGGASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLIHIWSVPVEYLTRKYQLVRARH |
| sequence length | 1244,509,225 |
| structure length | 1244,509,225 |
| publication title |
When width is more important than height: Barriers to electron transfer in E.coli nitrate reductase
rcsb |
| molecule tags | Oxidoreductase |
| molecule keywords | Respiratory nitrate reductase 1 alpha chain |
| source organism | Escherichia coli |
| ec nomenclature |
ec 1.7.99.4: Nitrate reductase. ec 1.7.99.4: Nitrate reductase. ec 1.7.99.4: Nitrate reductase. |
| pdb deposition date | 2008-09-11 |
| LinkProt deposition date | 2016-08-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| ABC | PF00384 | Molybdopterin | Molybdopterin oxidoreductase |
| ABC | PF01568 | Molydop_binding | Molydopterin dinucleotide binding domain |
| ABC | PF14710 | Nitr_red_alph_N | Respiratory nitrate reductase alpha N-terminal |
| ABC | PF13247 | Fer4_11 | 4Fe-4S dicluster domain |
| ABC | PF14711 | Nitr_red_bet_C | Respiratory nitrate reductase beta C-terminal |
| ABC | PF02665 | Nitrate_red_gam | Nitrate reductase gamma subunit |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | nitrate reductase domain fold | nitrate reductase domain like | ||
| Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Alpha-Beta Plaits | ||
| Mainly Alpha | Up-down Bundle | Fumarate Reductase Cytochrome B subunit | Transmembrane di-heme cytochromes, Chain C |
#chains in the LinkProt database with same CATH superfamily 3GYX BDE; 3GYX HKL; 3GYX ACH; 3GYX CIJ; 3GYX JL; 3GYX ABK; 3GYX DIJ; 3GYX DEL; 3GYX FK; 3GYX BEK; 3GYX ADK; 3GYX BCD; 3GYX AJK; 3GYX HJK; 3GYX CFJ; 3GYX BCI; 3GYX AHI; 3GYX ABD; 3GYX CEJ; 3GYX FIJ; 3GYX EGH; 3GYX BD; 3GYX HIK; 3GYX CGH; 3GYX AEF; 3GYX JK; 3GYX CDG; 3GYX ADF; 3GYX BCG; 3GYX CJL; 3GYX CFI; 3GYX CF; 3GYX AHL; 3GYX CIL; 3GYX BH; 3GYX GIL; 3GYX GL; 3GYX AGL; 3GYX EFG; 3GYX EL; 3GYX BDI; 3GYX HI; 3GYX ADE; 3GYX CJ; 3GYX BHK; 3GYX ABF; 3GYX EF; 3GYX CKL; 3GYX FKL; 3GYX KL; 3GYX DGH; 3GYX HJ; 3GYX CDH; 3GYX BG; 3GYX EFJ; 3GYX BEG; 3GYX BHI; 3GYX EIJ; 3GYX DF; 3GYX GHK; 3GYX ABJ; 3GYX JKL; 3GYX BGL; 3GYX EJK; 3GYX DEK; 3GYX CDK; 3GYX GKL; 3GYX BEJ; 3GYX ADJ; 3GYX AKL; 3GYX BDG; 3GYX CGJ; 3GYX AEH; 3GYX DI; 3GYX HIJ; 3GYX HL; 3GYX IJL; 3GYX CDF; 3GYX BEI; 3GYX CFG; 3GYX BIJ; 3GYX ADI; 3GYX BCF; 3GYX CFH; 3GYX ACD; 3GYX GHL; 3GYX IJ; 3GYX CEH; 3GYX ABG; 3GYX EJL; 3GYX BF; 3GYX CDL; 3GYX EHK; 3GYX BFG; 3GYX AFG; 3GYX BEL; 3GYX AB; 3GYX ACJ; 3GYX CD; 3GYX GIJ; 3GYX BGH; 3GYX ABC; 3GYX DEG; 3GYX AGJ; 3GYX EFI; 3GYX BEF; 3GYX ACF; 3GYX FGH; 3GYX FJK; 3EGW BC; 3GYX AIJ; 3GYX GHJ; 3GYX ABI; 3GYX DJ; 3GYX IKL; 3GYX BGK; 3GYX DHI; 3GYX GJL; 3EGW AC; 3GYX CDJ; 3GYX EFL; 3GYX BGI; 3GYX CJK; 3GYX FGK; 3GYX CFL; 3GYX EIL; 3GYX EKL; 3GYX AHK; 3GYX CEL; 3GYX ABL; 3GYX DIK; 3GYX GJK; 3GYX IJK; 3GYX CDE; 3GYX FL; 3GYX BEH; 3GYX ADH; 3GYX BCE; 3GYX AFH; 3GYX CFK; 3GYX BJK; 3GYX FIK; 3GYX BE; 3GYX HIL; 3GYX GH; 3GYX FGL; 3GYX ADG; 3GYX AFK; 3GYX AD; 3GYX DKL; 3GYX DIL; 3GYX CEF; 3GYX EGL; 3GYX BKL; 3GYX DEF; 3GYX CHI; 3GYX CGL; 3GYX EFH; 3GYX ACL; 3EGW ABC; 3GYX GHI; 3GYX ABH; 3GYX EHI; 3GYX BGJ; 3GYX ABE; 3GYX DGI; 3GYX DEI; 3GYX AGH; 3EGW AB; 3GYX CDI; 3GYX EFK; #chains in the LinkProt database with same CATH topology 3H90 AD; 3GYX BDE; 3GYX HKL; 3GYX ACH; 3GYX CIJ; 3GYX JL; 3GYX ABK; 3GYX DIJ; 3GYX DEL; 3GYX FK; 3GYX BEK; 2A6M AB; 3GYX ADK; 3GYX BCD; 3GYX AJK; 3GYX HJK; 3H90 BC; 3GYX CFJ; 3GYX BCI; 3GYX AHI; 3GYX ABD; 3GYX CEJ; 3GYX FIJ; 3GYX EGH; 3GYX BD; 3GYX HIK; 3GYX CGH; 3GYX AEF; 3GYX JK; 3GYX CDG; 3GYX CIL; 3GYX ADF; 3GYX BCG; 3GYX CJL; 3GYX CFI; 3GYX CF; 3GYX AHL; 3GYX ABG; 3GYX BH; 3GYX GIL; 3GYX GL; 3GYX AGL; 3GYX EFG; 3GYX EL; 3GYX BDI; 3GYX HI; 3GYX ADE; 3GYX CJ; 3GYX BHK; 3GYX ABF; 3GYX EF; 3GYX CKL; 3GYX FKL; 3GYX KL; 3GYX DGH; 3GYX HJ; 3GYX CDH; 3GYX BG; 3GYX EFJ; 3GYX BEG; 3H90 AC; 3GYX BHI; 3GYX EIJ; 3GYX DF; 3GYX GHK; 3GYX ABJ; 3GYX JKL; 3GYX BGL; 3GYX EJK; 3GYX DEK; 3GYX CDK; 3GYX GKL; 3GYX BEJ; 3GYX ADJ; 3GYX AKL; 3GYX BDG; 3GYX CGJ; 3FDS ACD; 3GYX AEH; 3GYX DI; 3GYX HIJ; 3GYX HL; 3GYX IJL; 3GYX CDF; 3GYX BEI; 3GYX CFG; 3GYX BIJ; 3GYX ADI; 3GYX BCF; 3GYX CFH; 3GYX ACD; 3GYX GHL; 3GYX IJ; 3H90 BCD; 3GYX CEH; 3GYX EJL; 3H90 ACD; 3GYX BF; 3GYX CDL; 3GYX EHK; 3GYX BFG; 3GYX AFG; 3GYX BEL; 3H90 BD; 3GYX AB; 3GYX ACJ; 3GYX CD; 3GYX GIJ; 3GYX BGH; 3GYX ABC; 3GYX DEG; 3GYX AGJ; 3GYX EFI; 3GYX BEF; 3H90 ABC; 3GYX ACF; 3GYX FGH; 3GYX FJK; 2ZEJ AB; 3EGW BC; 3GYX AIJ; 3GYX GHJ; 3GYX ABI; 3GYX DJ; 3GYX IKL; 3GYX BGK; 3GYX DHI; 3GYX GJL; 3EGW AC; 3GYX CDJ; 3GYX EFL; 3H90 ABD; 3GYX BGI; 3GYX CJK; 3GYX FGK; 3GYX CFL; 3GYX EIL; 3GYX EKL; 3FDS AC; 3GYX CEL; 3GYX ABL; 3GYX DIK; 3GYX GJK; 3GYX IJK; 3GYX CDE; 3GYX FL; 3GYX BEH; 3GYX ADH; 3GYX BCE; 3GYX AFH; 3GYX CFK; 3GYX BJK; 3GYX FIK; 3GYX BE; 3GYX HIL; 3GYX AHK; 3GYX GH; 3GYX FGL; 3GYX ADG; 3GYX AFK; 3GYX AD; 3GYX DKL; 3GYX DIL; 3GYX CEF; 3GYX EGL; 3GYX BKL; 3GYX DEF; 3GYX CHI; 3GYX CGL; 3GYX EFH; 3GYX ACL; 3H90 AB; 3EGW ABC; 3GYX GHI; 3GYX ABH; 3GYX EHI; 3GYX BGJ; 3GYX ABE; 3GYX DGI; 3GYX DEI; 3GYX AGH; 3EGW AB; 3GYX CDI; 3GYX EFK; #chains in the LinkProt database with same CATH homology 3GYX BDE; 3GYX HKL; 3GYX ACH; 3GYX CIJ; 3GYX JL; 3GYX ABK; 3GYX DIJ; 3GYX DEL; 3GYX FK; 3GYX BEK; 3GYX ADK; 3GYX BCD; 3GYX AJK; 3GYX HJK; 3GYX CFJ; 3GYX BCI; 3GYX AHI; 3GYX ABD; 3GYX CEJ; 3GYX FIJ; 3GYX EGH; 3GYX BD; 3GYX HIK; 3GYX CGH; 3GYX AEF; 3GYX JK; 3GYX CDG; 3GYX ADF; 3GYX BCG; 3GYX CJL; 3GYX CFI; 3GYX CF; 3GYX AHL; 3GYX CIL; 3GYX BH; 3GYX GIL; 3GYX GL; 3GYX AGL; 3GYX EFG; 3GYX EL; 3GYX BDI; 3GYX HI; 3GYX ADE; 3GYX CJ; 3GYX BHK; 3GYX ABF; 3GYX EF; 3GYX CKL; 3GYX FKL; 3GYX KL; 3GYX DGH; 3GYX HJ; 3GYX CDH; 3GYX BG; 3GYX EFJ; 3GYX BEG; 3GYX BHI; 3GYX EIJ; 3GYX DF; 3GYX GHK; 3GYX ABJ; 3GYX JKL; 3GYX BGL; 3GYX EJK; 3GYX DEK; 3GYX CDK; 3GYX GKL; 3GYX BEJ; 3GYX ADJ; 3GYX AKL; 3GYX BDG; 3GYX CGJ; 3FDS ACD; 3GYX AEH; 3GYX DI; 3GYX HIJ; 3GYX HL; 3GYX IJL; 3GYX CDF; 3GYX BEI; 3GYX CFG; 3GYX BIJ; 3GYX ADI; 3GYX BCF; 3GYX CFH; 3GYX ACD; 3GYX GHL; 3GYX IJ; 3GYX CEH; 3GYX ABG; 3GYX EJL; 3GYX BF; 3GYX CDL; 3GYX EHK; 3GYX BFG; 3GYX AFG; 3GYX BEL; 3GYX AB; 3GYX ACJ; 3GYX CD; 3GYX GIJ; 3GYX BGH; 3GYX ABC; 3GYX DEG; 3GYX AGJ; 3GYX EFI; 3GYX BEF; 3GYX ACF; 3GYX FGH; 3GYX FJK; 3EGW BC; 3GYX AIJ; 3GYX GHJ; 3GYX ABI; 3GYX DJ; 3GYX IKL; 3GYX BGK; 3GYX DHI; 3GYX GJL; 3EGW AC; 3GYX CDJ; 3GYX EFL; 3GYX BGI; 3GYX CJK; 3GYX FGK; 3GYX CFL; 3GYX EIL; 3GYX EKL; 3FDS AC; 3GYX CEL; 3GYX ABL; 3GYX DIK; 3GYX GJK; 3GYX IJK; 3GYX CDE; 3GYX FL; 3GYX BEH; 3GYX ADH; 3GYX BCE; 3GYX AFH; 3GYX CFK; 3GYX BJK; 3GYX FIK; 3GYX BE; 3GYX HIL; 3GYX AHK; 3GYX GH; 3GYX FGL; 3GYX ADG; 3GYX AFK; 3GYX AD; 3GYX DKL; 3GYX DIL; 3GYX CEF; 3GYX EGL; 3GYX BKL; 3GYX DEF; 3GYX CHI; 3GYX CGL; 3GYX EFH; 3GYX ACL; 3EGW ABC; 3GYX GHI; 3GYX ABH; 3GYX EHI; 3GYX BGJ; 3GYX ABE; 3GYX DGI; 3GYX DEI; 3GYX AGH; 3EGW AB; 3GYX CDI; 3GYX EFK;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
