| Link type | Probability | Chain A piercings | Chain B piercings | Chain E piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
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Unlink | 33% | -219E +231E | ||||||||||
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Unlink | 33% | -219E +231E | ||||||||||
| view details |
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Unlink | 33% | -219E +231E | ||||||||||
| view details |
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Unlink | 33% | -219E +231E | ||||||||||
| view details |
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Unlink | 33% | -219E +231E | ||||||||||
| view details |
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Unlink | 33% | -219E +231E | ||||||||||
| view details |
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Unlink | 33% | -219E +231E | ||||||||||
| view details |
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Unlink | 33% | -219E +231E | ||||||||||
| view details |
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Unlink | 33% | -219E +231E | ||||||||||
Chain A Sequence |
VRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKT |
Chain A Sequence |
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG |
Chain A Sequence |
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG |
| sequence length | 117,76,76 |
| structure length | 117,76,76 |
| publication title |
The Ubiquitin Binding Domain ZnF UBP Recognizes the C-Terminal Diglycine Motif of Unanchored Ubiquitin.
pubmed doi rcsb |
| molecule tags | Hydrolase |
| molecule keywords | Ubiquitin carboxyl-terminal hydrolase 5 |
| source organism | Homo sapiens |
| ec nomenclature |
ec 3.4.19.12: Ubiquitinyl hydrolase 1. |
| pdb deposition date | 2006-02-21 |
| LinkProt deposition date | 2016-10-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| ABE | PF02148 | zf-UBP | Zn-finger in ubiquitin-hydrolases and other protein |
| ABE | PF00240 | ubiquitin | Ubiquitin family |
| ABE | PF00240 | ubiquitin | Ubiquitin family |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | ||
| Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 |
#chains in the LinkProt database with same CATH superfamily 2G45 ABDE; 2G45 ADE; 2G45 ABE; 2G45 AE; 2G45 DE; 2G45 ABD; 1P3Q QV; 1AAR AB; 2G45 AB; 1P3Q RV; 2G45 BD; 1P3Q QRV; 2G45 BDE; #chains in the LinkProt database with same CATH topology 1K50 AC; 1K50 BD; 1Q10 AB; 2G45 AB; 1K50 ACD; 1K50 BC; 1P3Q QRV; 1K50 AD; 1K50 ABCD; 1K50 AB; 1K50 ABD; 2G45 DE; 2G45 BDE; 1K50 CD; 2G45 ABD; 2G45 ADE; 2G45 AE; 1AAR AB; 1P3Q RV; 2HJ1 AB; 1K50 ABC; 2G45 ABE; 1K50 BCD; 1P3Q QV; 2G45 ABDE; 2G45 BD; #chains in the LinkProt database with same CATH homology 2G45 ABDE; 2G45 ADE; 2G45 ABE; 2G45 AE; 2G45 DE; 2G45 ABD; 1P3Q QV; 1AAR AB; 2G45 AB; 1P3Q RV; 2G45 BD; 1P3Q QRV; 2G45 BDE;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
