| Link type | Probability | Chain A piercings | Chain B piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
|
Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
| view details |
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Unlink | 71% | +217A +238A -250A -273A +317A -338A | |||||||||
Chain A Sequence |
RILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPL-------LRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRDWYPKLW |
Chain A Sequence |
FRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGI |
| sequence length | 327,53 |
| structure length | 320,53 |
| publication title |
Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA
pubmed doi rcsb |
| molecule tags | Isomerase/rna |
| molecule keywords | pseudouridine synthase CBf5 |
| source organism | Pyrococcus furiosus |
| missing residues | A: 145-153 |
| ec nomenclature |
ec 5.4.99.25: tRNA pseudouridine(55) synthase. |
| pdb deposition date | 2009-05-22 |
| LinkProt deposition date | 2016-08-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| AB | PF01472 | PUA | PUA domain |
| AB | PF01509 | TruB_N | TruB family pseudouridylate synthase (N terminal domain) |
| AB | PF08068 | DKCLD | DKCLD (NUC011) domain |
| AB | PF16198 | TruB_C_2 | tRNA pseudouridylate synthase B C-terminal domain |
| AB | PF04135 | Nop10p | Nucleolar RNA-binding protein, Nop10p family |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase |
#chains in the LinkProt database with same CATH superfamily 3HJY AB; 3HJW AB; 3HJW ABC; #chains in the LinkProt database with same CATH topology 3HJY AB; 3HJW AB; 3HJW ABC; #chains in the LinkProt database with same CATH homology 3HJY AB; 3HJW AB; 3HJW ABC;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
