3F4YACE

Hiv gp41 six-helix bundle containing a mutant chr alpha-peptide sequence
Link type Probability Chain A piercings Chain C piercings Chain E piercings
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Unlink Unlink 45% +11E -36E
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Unlink Unlink 45% +11E -36E
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Unlink Unlink 45% +11E -36E
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Unlink Unlink 45% +11E -36E
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Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
view details
Unlink Unlink 45% +11E -36E
Interpreting sequences
Chain A Sequence
SGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL
Chain A Sequence
SGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL
Chain A Sequence
TTWEAWDRAIAEYAARIEALIRAAQEQQEKNEAALREL
sequence length 36,36,38
structure length 36,36,38
publication title Structural and biological mimicry of protein surface recognition by alpha/beta-peptide foldamers
pubmed doi rcsb
molecule tags Viral protein
molecule keywords Envelope glycoprotein gp160
pdb deposition date2008-11-03
LinkProt deposition date2016-08-17

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
ACE PF00517 GP41Retroviral envelope protein
ACE PF00517 GP41Retroviral envelope protein
Image from the rcsb pdb (www.rcsb.org)

3VTQA 3VTQB 3VTQE 3AHAA 3AHAC 3AHAE 3VIEA 3VIEC 3VIEE 5Z0WE 5YB3D 5YB3E 5YB3F 3F4YB 3F4YC 1AIKN 2Z2TA 2Z2TB 2Z2TC 2SIVA 2SIVC 2SIVE 2ZZON 5YB4D 5YB4E 5YB4F 3O3ZA 3G7AA 3F50A 5BN0B 5BN0E 5BN0N 3VTQA 3VTQB 3VTQE 3AHAA 3AHAC 3AHAE 3VIEA 3VIEC 3VIEE 5Z0WE 5YB3D 5YB3E 5YB3F 3F4YA 3F4YB 1AIKN 2Z2TA 2Z2TB 2Z2TC 2SIVA 2SIVC 2SIVE 2ZZON 5YB4D 5YB4E 5YB4F 3O3ZA 3G7AA 3F50A 5BN0B 5BN0E 5BN0N 3O3YA 4I2LD 3VTQC 3VTQD 3VTQF 3AHAB 3AHAD 3AHAF 3VIEB 3VIED 3VIEF 6R2GC 3VTPD 3O40B 3F4YD 3F4YF 4DZVB 3F4ZA 3F4ZB 3F4ZC 1AIKC 2Z2TD 2Z2TE 2Z2TF 4DZUB 2ZZOC 3O43B 5CMZB 5CMZD 3O3ZB 3O42B 3G7AB 3F50B 5BN0C 5BN0D 5BN0A
similar chains in the pdb database (40% sequence similarity)

 
            
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 3VTQ_A;  3VTQ_B;  3VTQ_E;  3AHA_A;  3AHA_C;  3AHA_E;  3VIE_A;  3VIE_C;  3VIE_E;  5Z0W_E;  5YB3_D;  5YB3_E;  5YB3_F;  3F4Y_B;  3F4Y_C;  1AIK_N;  2Z2T_A;  2Z2T_B;  2Z2T_C;  2SIV_A;  2SIV_C;  2SIV_E;  2ZZO_N;  5YB4_D;  5YB4_E;  5YB4_F;  3O3Z_A;  3G7A_A;  3F50_A;  5BN0_B;  5BN0_E;  5BN0_N;  3VTQ_A;  3VTQ_B;  3VTQ_E;  3AHA_A;  3AHA_C;  3AHA_E;  3VIE_A;  3VIE_C;  3VIE_E;  5Z0W_E;  5YB3_D;  5YB3_E;  5YB3_F;  3F4Y_A;  3F4Y_B;  1AIK_N;  2Z2T_A;  2Z2T_B;  2Z2T_C;  2SIV_A;  2SIV_C;  2SIV_E;  2ZZO_N;  5YB4_D;  5YB4_E;  5YB4_F;  3O3Z_A;  3G7A_A;  3F50_A;  5BN0_B;  5BN0_E;  5BN0_N;  3O3Y_A;  4I2L_D;  3VTQ_C;  3VTQ_D;  3VTQ_F;  3AHA_B;  3AHA_D;  3AHA_F;  3VIE_B;  3VIE_D;  3VIE_F;  6R2G_C;  3VTP_D;  3O40_B;  3F4Y_D;  3F4Y_F;  4DZV_B;  3F4Z_A;  3F4Z_B;  3F4Z_C;  1AIK_C;  2Z2T_D;  2Z2T_E;  2Z2T_F;  4DZU_B;  2ZZO_C;  3O43_B;  5CMZ_B;  5CMZ_D;  3O3Z_B;  3O42_B;  3G7A_B;  3F50_B;  5BN0_C;  5BN0_D;  5BN0_A; 
           

LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling