3BCPACD

Crystal structure of the swapped non covalent form of p19a/l28q/n67d bs-rnase
Link type Probability Chain A piercings Chain C piercings Chain D piercings
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Unlink Unlink 25% +103D -124D +64A -124A -28D +84D -101D +124D +47A -60A +46C -80C +102C -119C
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Interpreting sequences
Chain A Sequence
KESAAAKFERQHMDSGNSASSSSNYCNQMMXXRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKDGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
Chain A Sequence
KESAAAKFERQHMDSGNSASSSSNYCNQMMXXRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKDGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
Chain A Sequence
KESAAAKFERQHMDSGNSASSSSNYCNQMMXXRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKDGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
sequence length 124,124,124
structure length 124,124,124
publication title The buried diversity of bovine seminal ribonuclease: shape and cytotoxicity of the swapped non-covalent form of the enzyme
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Seminal ribonuclease
source organism Bos taurus
ec nomenclature ec 3.1.27.5: Pancreatic ribonuclease.
ec 3.1.27.5: Pancreatic ribonuclease.
ec 3.1.27.5: Pancreatic ribonuclease.
pdb deposition date2007-11-13
LinkProt deposition date2016-10-29

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
ACD PF00074 RnaseAPancreatic ribonuclease
ACD PF00074 RnaseAPancreatic ribonuclease
ACD PF00074 RnaseAPancreatic ribonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.130.10 Alpha Beta Roll P-30 Protein P-30 Protein 3bcpA00
3.10.130.10 Alpha Beta Roll P-30 Protein P-30 Protein 3bcpC00
3.10.130.10 Alpha Beta Roll P-30 Protein P-30 Protein 3bcpD00
3BCPACD 3BCPBC 3BCPAC 3DJOAB 1JS0AC 3DJQAB 1JS0ABC 3BCOAB 3DJVAB 1A4YBD 1H8XAB 3BCPBCD 3DJXAB 1JS0AB 3BCPAD 3BCPAB 3FL3AB 3BCPABC 1Y94AB 3FL0AB 1A4YADE 3FKZAB 1A4YABD 3BCPCD 1A2WAB 3BCPABD 1Y92AB 3BCPABCD 3DJPAB 3BCPBD 11BGAB 11BAAB 1F0VCD 3FL1AB 1F0VAB 1JS0BC 1BSRAB 1A4YAB
chains in the LinkProt database with same CATH superfamily
3BCPACD 3BCPBC 3BCPAC 3DJOAB 1JS0AC 3DJQAB 1JS0ABC 3BCOAB 3DJVAB 1A4YBD 1H8XAB 3BCPBCD 3DJXAB 1JS0AB 3BCPAD 3BCPAB 3FL3AB 3BCPABC 1Y94AB 3FL0AB 1A4YADE 3FKZAB 1A4YABD 3BCPCD 1A2WAB 3BCPABD 1Y92AB 3BCPABCD 3DJPAB 3BCPBD 11BGAB 11BAAB 1F0VCD 3FL1AB 1F0VAB 1JS0BC 1BSRAB 1A4YAB
chains in the LinkProt database with same CATH topology
3BCPACD 3BCPBC 3BCPAC 3DJOAB 1JS0AC 3DJQAB 1JS0ABC 3BCOAB 3DJVAB 1A4YBD 1H8XAB 3BCPBCD 3DJXAB 1JS0AB 3BCPAD 3BCPAB 3FL3AB 3BCPABC 1Y94AB 3FL0AB 1A4YADE 3FKZAB 1A4YABD 3BCPCD 1A2WAB 3BCPABD 1Y92AB 3BCPABCD 3DJPAB 3BCPBD 11BGAB 11BAAB 1F0VCD 3FL1AB 1F0VAB 1JS0BC 1BSRAB 1A4YAB
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 3BCP ACD;  3BCP BC;  3BCP AC;  3DJO AB;  1JS0 AC;  3DJQ AB;  1JS0 ABC;  3BCO AB;  3DJV AB;  1A4Y BD;  1H8X AB;  3BCP BCD;  3DJX AB;  1JS0 AB;  3BCP AD;  3BCP AB;  3FL3 AB;  3BCP ABC;  1Y94 AB;  3FL0 AB;  1A4Y ADE;  3FKZ AB;  1A4Y ABD;  3BCP CD;  1A2W AB;  3BCP ABD;  1Y92 AB;  3BCP ABCD;  3DJP AB;  3BCP BD;  11BG AB;  11BA AB;  1F0V CD;  3FL1 AB;  1F0V AB;  1JS0 BC;  1BSR AB;  1A4Y AB; 
#chains in the LinkProt database with same CATH topology
 3BCP ACD;  3BCP BC;  3BCP AC;  3DJO AB;  1JS0 AC;  3DJQ AB;  1JS0 ABC;  3BCO AB;  3DJV AB;  1A4Y BD;  1H8X AB;  3BCP BCD;  3DJX AB;  1JS0 AB;  3BCP AD;  3BCP AB;  3FL3 AB;  3BCP ABC;  1Y94 AB;  3FL0 AB;  1A4Y ADE;  3FKZ AB;  1A4Y ABD;  3BCP CD;  1A2W AB;  3BCP ABD;  1Y92 AB;  3BCP ABCD;  3DJP AB;  3BCP BD;  11BG AB;  11BA AB;  1F0V CD;  3FL1 AB;  1F0V AB;  1JS0 BC;  1BSR AB;  1A4Y AB; 
#chains in the LinkProt database with same CATH homology
 3BCP ACD;  3BCP BC;  3BCP AC;  3DJO AB;  1JS0 AC;  3DJQ AB;  1JS0 ABC;  3BCO AB;  3DJV AB;  1A4Y BD;  1H8X AB;  3BCP BCD;  3DJX AB;  1JS0 AB;  3BCP AD;  3BCP AB;  3FL3 AB;  3BCP ABC;  1Y94 AB;  3FL0 AB;  1A4Y ADE;  3FKZ AB;  1A4Y ABD;  3BCP CD;  1A2W AB;  3BCP ABD;  1Y92 AB;  3BCP ABCD;  3DJP AB;  3BCP BD;  11BG AB;  11BA AB;  1F0V CD;  3FL1 AB;  1F0V AB;  1JS0 BC;  1BSR AB;  1A4Y AB; 
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#similar chains in the LinkProt database (?% sequence similarity)
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#similar chains, but unlinked
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#similar chains in the pdb database (?% sequence similarity)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling