| Link type | Probability | Chain A piercings | Chain B piercings | Chain D piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
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Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
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Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
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Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
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Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
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Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
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Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
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Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
|
Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
| view details |
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Other | 29% | -40B -53B +93B -112B -41D -135D | +146A +52D -66D +121D | -41B +145B | ||||||||
Chain A Sequence |
SGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPNGIFVKTKGLWESDDRKKHLLIREQHPELDIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEWIKEPKKEVPFDRLKRK |
Chain A Sequence |
SGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPNGIFVKTKGLWESDDRKKHLLIREQHPELDIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEWIKEPKKEVPFDRLKRK |
Chain A Sequence |
SGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPNGIFVKTKGLWESDDRKKHLLIREQHPELDIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEWIKEPKKEVPFDRLKRK |
| sequence length | 129,129,129 |
| structure length | 129,129,129 |
| publication title |
Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I.
pubmed doi rcsb |
| molecule tags | Hydrolase |
| molecule keywords | ENDONUCLEASE I |
| source organism | Enterobacteria phage t7 |
| ec nomenclature |
ec 3.1.21.2: Deoxyribonuclease IV. ec 3.1.21.2: Deoxyribonuclease IV. ec 3.1.21.2: Deoxyribonuclease IV. |
| pdb deposition date | 2000-10-04 |
| LinkProt deposition date | 2016-08-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| ABD | PF05367 | Phage_endo_I | Phage endonuclease I |
| ABD | PF05367 | Phage_endo_I | Phage endonuclease I |
| ABD | PF05367 | Phage_endo_I | Phage endonuclease I |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Restriction Endonuclease | Restriction Endonuclease | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Restriction Endonuclease | Restriction Endonuclease | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Restriction Endonuclease | Restriction Endonuclease |
#chains in the LinkProt database with same CATH superfamily 1M0D CD; 1M0D BD; 1M0I ACD; 1M0D AC; 1M0I AD; 1FZR BD; 1FZR AC; 1FZR BC; 1M0D ABCD; 1M0D AB; 1FZR AD; 1M0I ABD; 1FZR ACD; 1M0I CD; 1M0I BC; 1M0D ABD; 1FZR ABCD; 1FZR ABD; 1M0I ABCD; 1M0I AB; 1M0D AD; 1FZR CD; 1M0D ACD; 1M0D BC; 1M0I BCD; 1FZR AB; 1M0D BCD; 1M0D ABC; 1M0I AC; 1M0I BD; 1FZR BCD; 1FZR ABC; 1M0I ABC; #chains in the LinkProt database with same CATH topology 1M0D CD; 1M0D BD; 1M0I ACD; 1M0D AC; 1M0I AD; 1FZR BD; 1FZR AC; 1FZR BC; 1M0D ABCD; 1M0D AB; 1FZR AD; 1M0I ABD; 1FZR ACD; 1M0I CD; 1M0I BC; 1M0D ABD; 1FZR ABCD; 1FZR ABD; 1M0I ABCD; 1M0I AB; 1M0D AD; 1FZR CD; 1M0D ACD; 1M0D BC; 1M0I BCD; 1FZR AB; 1M0D BCD; 1M0D ABC; 1M0I AC; 1M0I BD; 1FZR BCD; 1FZR ABC; 1M0I ABC; #chains in the LinkProt database with same CATH homology 1M0D CD; 1M0D BD; 1M0I ACD; 1M0D AC; 1M0I AD; 1FZR BD; 1FZR AC; 1FZR BC; 1M0D ABCD; 1M0D AB; 1FZR AD; 1M0I ABD; 1FZR ACD; 1M0I CD; 1M0I BC; 1M0D ABD; 1FZR ABCD; 1FZR ABD; 1M0I ABCD; 1M0I AB; 1M0D AD; 1FZR CD; 1M0D ACD; 1M0D BC; 1M0I BCD; 1FZR AB; 1M0D BCD; 1M0D ABC; 1M0I AC; 1M0I BD; 1FZR BCD; 1FZR ABC; 1M0I ABC;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
