| Link type | Probability | Chain A piercings | Chain B piercings | Chain C piercings | Chain G piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
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Other | 36% | +36B -235B +44C -151C -645G +800G +1096G -1116G +1210G -1230G | -801A -235B | ||||||||||
Chain A Sequence |
VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR |
Chain A Sequence |
SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRI-------PIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL |
Chain A Sequence |
YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED |
Chain A Sequence |
SQIGLFSKICRVTIKTLHYYNKIGLLVPAYINPDNGYRFYTSDQLMKFHQIASLRQLGFTITEIVTLTQDENSCHIIERRRLEIQKQIRDMADMLSRINHYLQHKKKERIMLYQAALKEIPECIVYSKRFIVPDFSSYIKLIPPIGQEVMKANPGLTLTTPAYCFTLYHDKEYKEKNMDVEFCEAVNDFGKNEGNIIFQVIPAITAVTVIHKGPYDSLRNAYIYLMQWVEDNGYLLTNSPRESYIDGIWNKQDSAEWMTEIQFPVEKV |
| sequence length | 231,231,1339,268 |
| structure length | 231,224,1339,268 |
| publication title |
Structural visualization of bacterial multidrug-activated transcription
rcsb |
| molecule tags | Transcription, transferase/dna |
| molecule keywords | DNA-directed RNA polymerase subunit alpha |
| source organism | Escherichia coli o157:h7 |
| missing residues | B: 159-167 |
| ec nomenclature |
ec 2.7.7.6: DNA-directed RNA polymerase. ec 2.7.7.6: DNA-directed RNA polymerase. ec 2.7.7.6: DNA-directed RNA polymerase. |
| pdb deposition date | 2020-06-28 |
| LinkProt deposition date | 2021-04-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| ABCG | PF01000 | RNA_pol_A_bac | RNA polymerase Rpb3/RpoA insert domain |
| ABCG | PF03118 | RNA_pol_A_CTD | Bacterial RNA polymerase, alpha chain C terminal domain |
| ABCG | PF01000 | RNA_pol_A_bac | RNA polymerase Rpb3/RpoA insert domain |
| ABCG | PF03118 | RNA_pol_A_CTD | Bacterial RNA polymerase, alpha chain C terminal domain |
| ABCG | PF04560 | RNA_pol_Rpb2_7 | RNA polymerase Rpb2, domain 7 |
| ABCG | PF04561 | RNA_pol_Rpb2_2 | RNA polymerase Rpb2, domain 2 |
| ABCG | PF04563 | RNA_pol_Rpb2_1 | RNA polymerase beta subunit |
| ABCG | PF04565 | RNA_pol_Rpb2_3 | RNA polymerase Rpb2, domain 3 |
Image from the rcsb pdb (www.rcsb.org)#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
