Jmol._Canvas2D (Jmol) "jmolApplet0"[x]
loadClass core.package
loadClass java.lang.String
loadClass core.package
JSmol exec jmolApplet0 start applet null
Jmol JavaScript applet jmolApplet0__514467889910187__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet0__514467889910187__)
nographics false
nographics false
headless false
vwrOptions:
{ "name":"jmolApplet0","applet":true,"documentBase":"https://linkprot.cent.uw.edu.pl/view/6LNT/ACEF/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__514467889910187__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"514467889910187","bgcolor":"white" }
setting document base to "https://linkprot.cent.uw.edu.pl/view/6LNT/ACEF/"
(C) 2015 Jmol Development
Jmol Version: 14.4.0_2015.11.18 2015-11-18 09:28
java.vendor: Java2Script (HTML5)
java.version: 2015-11-10 05:48:48 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet0 (signed)
loadClass JS.ScriptManager
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor white
backgroundColor = "white"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue SERVICECallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet0__514467889910187__ ready
script 1 started
platformSpeed = 8
0 FM /static-pdb/lasso_data/6LNT/ACEF/6LNT.pdb_A.pdb
1 FM /static-pdb/lasso_data/6LNT/ACEF/6LNT.pdb_C.pdb
2 FM /static-pdb/lasso_data/6LNT/ACEF/6LNT.pdb_E.pdb
3 FM /static-pdb/lasso_data/6LNT/ACEF/6LNT.pdb_F.pdb
loadClass J.io.FilesReader
FileManager opening url https://linkprot.cent.uw.edu.pl/static-pdb/lasso_data/6LNT/ACEF/6LNT.pdb_A.pdb
The Resolver thinks Pdb
loadClass J.adapter.readers.pdb.PdbReader
FileManager opening url https://linkprot.cent.uw.edu.pl/static-pdb/lasso_data/6LNT/ACEF/6LNT.pdb_C.pdb
The Resolver thinks Pdb
FileManager opening url https://linkprot.cent.uw.edu.pl/static-pdb/lasso_data/6LNT/ACEF/6LNT.pdb_E.pdb
The Resolver thinks Pdb
FileManager opening url https://linkprot.cent.uw.edu.pl/static-pdb/lasso_data/6LNT/ACEF/6LNT.pdb_F.pdb
The Resolver thinks Pdb
openFiles(4) 5015 ms
reading 1332 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
4 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
1332 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Adding embedded #jmolscript: select ({0:502});backbone only;select ({503:1005});backbone only;select ({1006:1168});backbone only;select ({1169:1331});backbone only;select *;
4 models
loadClass J.g3d.HermiteRenderer
1332 atoms selected
platformSpeed = 7
cartoonsFancy = true
sheetSmoothing = 1.0
traceAlpha = true
loadClass JS.CmdExt
specularPower = 9
ambientPercent = 20
antialiasDisplay = true
1332 atoms selected
loadClass JS.IsoExt
loadClass J.shapespecial.Draw
FileManager opening url https://linkprot.cent.uw.edu.pl/static-jms/lasso_data/6LNT/ACEF/surfacesAll_6LNT.pdb_A_cl134.jm
script compiler ERROR: command expected
----line 1 command 1 of /static-jms/lasso_data/6LNT/ACEF/surfacesAll_6LNT.pdb_A_cl134.jm:
< <<<<
Script completed
Jmol script terminated
loadClass J.renderspecial.DrawRenderer
Image from the