| Link type | Probability | Loop ranges | Chain C piercings | Chain E piercings | Chain F piercings | Chain G piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
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Other | 40% | -C | -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G | |||||||||||
Chain C Sequence |
VQSRTDVFNEQFANEALHPMTKVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDFFDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHALNIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFIQRGATYTINAAGEFEFSGRNEKWDQSLYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTYPLVRQSGKGVDAVSIMEEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYLSHIRERLHITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGSASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELRLRRLSVGLRLITNPRIARRFDGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSPVANGQVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA |
Chain C Sequence |
KVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDFFDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHALNIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFIQRGATYTINAAGEFEFSGRNEKWDQSLYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTYPLVRQ--------SIMEEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYLSHIRERLHITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGSASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELRLRRLSVGLRLITNPRIARRFDGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSPVANGQVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA |
Chain C Sequence |
KVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDFFDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHALNIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFIQRGATYTINAAGEFEFSGRNEKWDQSLYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTYPLVRQ--------SIMEEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYLSHIRERLHITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGSASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELRLRRLSVGLRLITNPRIARRFDGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSPVANGQVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA |
Chain C Sequence |
KKPPTVVQSRTDVFNEQFANEALHPMTKVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDFFDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHALNIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFIQRGATYTINAAGEFEFSGRNEKWDQSLYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTYPLVRQ--------SIMEEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYLSHIRERLHITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGSASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELRLRRLSVGLRLITNPRIARRFDGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSPVANGQVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA |
| sequence length | 1220,1199,1199,1226 |
| structure length | 1220,1191,1191,1218 |
| publication title |
Structure of RdRps within a transcribing dsRNA virus provides insights into the mechanisms of RNA synthesis.
pubmed doi rcsb |
| molecule tags | Viral protein/rna |
| molecule keywords | RNA-dependent RNA polymerase |
| source organism | Cypovirus 1 |
| missing residues | E: 777-786 F: 777-786 G: 777-786 |
| pdb deposition date | 2019-05-16 |
| LinkProt deposition date | 2019-11-25 |
Image from the rcsb pdb (www.rcsb.org)#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
