6K32CEFG

Rdrp complex
E: 777-786 F: 777-786 G: 777-786
Other
40%
Link type Probability Loop ranges Chain C piercings Chain E piercings Chain F piercings Chain G piercings
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
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Other Other 40% -C -1334E -1334F +456G -466G +490G -510G -676G +1095G -1105G +1119G
Interpreting sequences
Chain C Sequence
.................................VQSRTDVFNEQFANEALHPMTKVIFNGLDVNTEVQPLSDDFKQISDP160
KGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDFFDTATGIDLTKGIPLVQDLLVPIGVTAG240
AEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQ320
AGTKYGLGLTETRLDYVRLVKTIVGHALNIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPE400
LAFDHDHIIRCLMLAAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHL480
AIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFIQRGATYTI560
NAAGEFEFSGRNEKWDQSLYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQ640
RGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNF720
SGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTYPLVRQSGKGVDAVSIMEEIVYPDPSTTL800
SQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYLSHIRERLHITNVPDPIYITGASTP880
DQIAASVQATHVAVVLYQSGVINGSASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQT960
SDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAF1040
RWSRYFLDELRLRRLSVGLRLITNPRIARRFDGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYT1120
HPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGK1200
LFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSP1280
VANGQVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA1333
Chain C Sequence
KVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDFFDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHALNIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFIQRGATYTINAAGEFEFSGRNEKWDQSLYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTYPLVRQ--------SIMEEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYLSHIRERLHITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGSASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELRLRRLSVGLRLITNPRIARRFDGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSPVANGQVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA
Chain C Sequence
KVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDFFDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHALNIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFIQRGATYTINAAGEFEFSGRNEKWDQSLYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTYPLVRQ--------SIMEEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYLSHIRERLHITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGSASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELRLRRLSVGLRLITNPRIARRFDGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSPVANGQVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA
Chain C Sequence
KKPPTVVQSRTDVFNEQFANEALHPMTKVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDFFDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHALNIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFIQRGATYTINAAGEFEFSGRNEKWDQSLYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTYPLVRQ--------SIMEEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYLSHIRERLHITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGSASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELRLRRLSVGLRLITNPRIARRFDGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSPVANGQVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA
sequence length 1220,1199,1199,1226
structure length 1220,1191,1191,1218
publication title Structure of RdRps within a transcribing dsRNA virus provides insights into the mechanisms of RNA synthesis.
pubmed doi rcsb
molecule tags Viral protein/rna
molecule keywords RNA-dependent RNA polymerase
source organism Cypovirus 1
missing residues E: 777-786 F: 777-786 G: 777-786
pdb deposition date2019-05-16
LinkProt deposition date2019-11-25
Image from the rcsb pdb (www.rcsb.org)


Warning
  • This is a unique chain - no homologues found.



 
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling
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