6HJXABCD

X-ray structure of a pentameric ligand gated ion channel from erwinia chrysanthemi (elic) 7'c pore mutant (l238c) in complex with nanobody 72
A: 288-292 C: 178-182,288-293 D: 179-183,287-293
Link type Probability Loop ranges Chain A piercings Chain B piercings Chain C piercings Chain D piercings
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
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Other Other 39% -A +17B -41B -110B +148B -161B +198B -256B -315B -314C -315C +319C +314D -317A -315B -318D
Interpreting sequences
Chain A Sequence
ARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFSERLQTSFTCMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQA---EDDLLIQRSRLAFPLGFLAIGSV
Chain A Sequence
PVDARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFSERLQTSFTCMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANGVEDDLLIQRSRLAFPLGFLAIGSV
Chain A Sequence
PVDARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHL---QPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFSERLQTSFTCMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQA----DDLLIQRSRLAFPLGFLAIGSVLVI
Chain A Sequence
ARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLS---PNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFSERLQTSFTCMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQ-----DDLLIQRSRLAFPLGFLAIGSVLVIR
sequence length 306,309,312,310
structure length 303,309,305,302
publication title A lipid recognition site shapes the agonist response of a pentameric ligand-gated ion channel
rcsb
molecule tags Membrane protein
molecule keywords Cys-loop ligand-gated ion channel
source organism Dickeya chrysanthemi
missing residues A: 288-292 C: 178-182,288-293 D: 179-183,287-293
pdb deposition date2018-09-04
LinkProt deposition date2019-10-12
Image from the rcsb pdb (www.rcsb.org)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling