5Y2MBEJ

Crystal structure of a group 2 ha binding antibody af4h1k1 fab in complex with the h4n6 duck isolate (h4-cz/56) hemagglutinin
Link type Probability Loop ranges Chain B piercings Chain E piercings Chain J piercings
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
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Hopf.1 U Ring Hopf.1 U Ring 55% -B +337E -500E +5J -324J +234B +323J
Interpreting sequences
Chain B Sequence
GNPVICMGHHAVANGTMVKTLADDQVEVVTAQELVESQNLPELCPSPLRLVDGQTCDIINGALGSPGCDHLNGAEWDVFIERPNAVDTCYPFDVPEYQSLRSILANNGKFEFIAEEFQWNTVKQNGKSGACKRANVNDFFNRLNWLVKSDGNAYPLQNLTKINNGDYARLYIWGVHHPSTDTEQTNLYKNNPGGVTVSTKTSQTSVVPNIGSRPLVRGQSGRVSFYWTIVEPGDLIVFNTIGNLIAPRGHYKLNNQKKSTILNTAIPIGSCVSKCHTDKGSLSTTKPFQNISRIAVGDCPRYVKQGSLKLATGMRNIPE
Chain B Sequence
GLFGAIAGFIENGWQGLIDGWYGFRHQNAEGTGTAADLKSTQAAIDQINGKLNRLIEKTNDKYHQIEKEFEQVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDVTDSEMNKLFERVRRQLRENAEDKGNGCFEIFHKCDNNCIESIRNGTYDHDIYRDEAINNRFQ
Chain B Sequence
DIVMTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYRASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSFTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
sequence length 319,172,212
structure length 319,172,212
publication title An H3-clade neutralizing antibody screened from an H7N9 patient that binds group 2 influenza A hemagglutinins
rcsb
molecule tags Immune system
molecule keywords Hemagglutinin
source organism Influenza a virus (strain a/duck/czechoslovakia/1956 h4n6)
pdb deposition date2017-07-26
LinkProt deposition date2019-02-15
Image from the rcsb pdb (www.rcsb.org)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling