5LK8AC

Single particle reconstruction of slow bee paralysis virus empty particle
A: 181-192 C: 72-76,217-222
Link type Probability Chain A piercings Chain C piercings
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
view details
Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
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Hopf.2 Hopf.2 55% -116C +127C -186C -242C +263C -245A
Interpreting sequences
Chain A Sequence
TPLLPTTNDGRVTFGEAFNDLKDLARRYQLYWEGTILEGNLRAIRRNSALVQLPLYPHGLRIQPDVNNPIWNIMRDGHIPVISSGFRYFRGGLRLRIVVEGLNSCVWVQHHPDRPSIFSRPIIGRYIAAKDAYRNHAYAAYVQNMSVNRTIEVEVPFYQPGLYGMLNAS----------LRFTGLGDLLIGIEGEQPIPKEGIEISVYYSIADDFSFNIFCGFPPMVYCDETY
Chain A Sequence
NPPDPTPAKFFVPIPSHSWAHGTNTSEPTNTLRLDGGVVGVGRSDDIGTSDTAISGIIGVYGLLKPFDWNA---GRNVGGHLLWSMPVHPQVDKDQVIQVMTQSKLTQYYLPPISVVSSLYAYTRGSIKYKFLFGNNPRHNARLLVAYIPGISSDNRLTLERARNSAHVVFSLNEVSEFVFTVPYITDTMWWPRKYGGPQAAGEFVAPSYICMFIL----AMESVPSIVTIVPMIAAGDDFEVAVPAQPAVGLSRNIDVIYP
sequence length 233,262
structure length 223,255
publication title Cryo-EM study of slow bee paralysis virus at low pH reveals iflavirus genome release mechanism.
pubmed doi rcsb
molecule tags Virus
molecule keywords VP1
missing residues A: 181-192 C: 72-76,217-222
pdb deposition date2016-07-21
LinkProt deposition date2017-01-22
Image from the rcsb pdb (www.rcsb.org)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling