5JWEACGR

Crystal structure of h-2db in complex with the lcmv-derived gp92-101 peptide
G: 194-198
Link type Probability Chain A piercings Chain C piercings Chain G piercings Chain R piercings
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
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Other Other 33% +35C +276G -277R -276A -5A +24A +167A -3C -64C +165C +276C +277C
Interpreting sequences
Chain A Sequence
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEP
Chain A Sequence
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEP
Chain A Sequence
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPR---EVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEP
Chain A Sequence
CSANNSHHYI
sequence length 276,276,276,10
structure length 276,276,273,10
publication title Crystal structures of the LCMV derived epitopes GP92 and GP392 in complex with H-2Db explain the different effects of post-translational modifications in cytotoxic T cell recognition
rcsb
molecule tags Immune system
molecule keywords H-2 class I histocompatibility antigen, D-B alpha chain
source organism Mus musculus
missing residues G: 194-198
pdb deposition date2016-05-12
LinkProt deposition date2017-05-27
Image from the rcsb pdb (www.rcsb.org)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling