| Link type | Probability | Chain E piercings | Chain F piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
| view details |
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
| view details |
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
| view details |
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
| view details |
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
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Hopf.2 | 68% | -3F -29F +182F | -5E | ||||||||
Chain E Sequence |
MKTIEVDDELYSYIASHTKHIGESRSDILRRMLKFSAASQ-------------------KPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI |
Chain E Sequence |
MKTIEVDDELYSYIASHTKHIGESRSDILRRMLKF------------------------KPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI |
| sequence length | 162,162 |
| structure length | 162,157 |
| publication title |
Structural insights into the cooperative binding of SeqA to a tandem GATC repeat
pubmed doi rcsb |
| molecule tags | Replication inhibitor/dna |
| molecule keywords | Protein seqA |
| source organism | Escherichia coli |
| missing residues | E: 40-60 F: 35-60 |
| pdb deposition date | 2008-12-22 |
| LinkProt deposition date | 2016-08-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| EF | PF03925 | SeqA | SeqA protein C-terminal domain |
| EF | PF17206 | SeqA_N | SeqA protein N-terminal domain |
| EF | PF03925 | SeqA | SeqA protein C-terminal domain |
| EF | PF17206 | SeqA_N | SeqA protein N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant | Met repressor-like | ||
| Mainly Alpha | Up-down Bundle | Replication modulator SeqA, C-terminal DNA-binding domain | Replication modulator SeqA, C-terminal DNA-binding domain |
#chains in the LinkProt database with same CATH superfamily 1ARR AB; 3FMT BEF; 3FMT ABF; 3FMT EF; 3FMT ABE; 3FMT AB; 1ARQ AB; 3FMT AEF; #chains in the LinkProt database with same CATH topology 1ARR AB; 3FMT BEF; 3FMT ABF; 3FMT EF; 3FMT ABE; 3FMT AB; 1ARQ AB; 3FMT AEF; #chains in the LinkProt database with same CATH homology 1ARR AB; 3FMT BEF; 3FMT ABF; 3FMT EF; 3FMT ABE; 3FMT AB; 1ARQ AB; 3FMT AEF;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
