3DNOCDF

Molecular structure for the hiv-1 gp120 trimer in the cd4-bound state
Link type Probability Chain C piercings Chain D piercings Chain F piercings
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Unlink Unlink 41% +450C -480C
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Unlink Unlink 41% +450C -480C
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Unlink Unlink 41% +450C -480C
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Unlink Unlink 41% +450C -480C
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Unlink Unlink 41% +450C -480C
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Unlink Unlink 41% +450C -480C
view details
Unlink Unlink 41% +450C -480C
view details
Unlink Unlink 41% +450C -480C
view details
Unlink Unlink 41% +450C -480C
view details
Unlink Unlink 41% +450C -480C
view details
Unlink Unlink 41% +450C -480C
view details
Unlink Unlink 41% +450C -480C
view details
Unlink Unlink 41% +450C -480C
view details
Unlink Unlink 41% +450C -480C
view details
Unlink Unlink 41% +450C -480C
Interpreting sequences
Chain C Sequence
GSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIE
Chain C Sequence
TENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTP
Chain C Sequence
GSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIE
sequence length 83,35,83
structure length 83,35,83
publication title Molecular architecture of native HIV-1 gp120 trimers.
pubmed doi rcsb
molecule tags Viral protein
molecule keywords HIV-1 envelope glycoprotein gp120
source organism Hiv-1 m:b_hxb2r
pdb deposition date2008-07-02
LinkProt deposition date2016-08-17

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
CDF PF00516 GP120Envelope glycoprotein GP120
CDF PF00516 GP120Envelope glycoprotein GP120
CDF PF00516 GP120Envelope glycoprotein GP120
Image from the rcsb pdb (www.rcsb.org)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling