2DSBABD

Crystal structure of human adp-ribose pyrophosphatase nudt5
Link type Probability Chain A piercings Chain B piercings Chain D piercings
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
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Hopf.1 U Ring Hopf.1 U Ring 32% +51B +86D +205A -219A
Interpreting sequences
Chain A Sequence
KQYIISEELISEGKWVKLEKTTYMDPTGKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDALVAEEHLTVDARVYSYALALKHANAKPFEVPFLKF
Chain A Sequence
KQYIISEELISEGKWVKLEKTTYMDPTGKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDALVAEEHLTVDARVYSYALALKHANAKPFEVPFLKF
Chain A Sequence
KQYIISEELISEGKWVKLEKTTYMDPTGKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDALVAEEHLTVDARVYSYALALKHANAKPFEVPFLKF
sequence length 206,206,206
structure length 206,206,206
publication title Crystal Structures of Human NUDT5 Reveal Insights into the Structural Basis of the Substrate Specificity
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords ADP-sugar pyrophosphatase
source organism Homo sapiens
ec nomenclature ec 3.6.1.13: ADP-ribose diphosphatase.
ec 3.6.1.58: 8-oxo-dGDP phosphatase.
ec 3.6.1.13: ADP-ribose diphosphatase.
ec 3.6.1.58: 8-oxo-dGDP phosphatase.
ec 3.6.1.13: ADP-ribose diphosphatase.
ec 3.6.1.58: 8-oxo-dGDP phosphatase.
pdb deposition date2006-06-28
LinkProt deposition date2016-10-22

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
ABD PF00293 NUDIXNUDIX domain
ABD PF00293 NUDIXNUDIX domain
ABD PF00293 NUDIXNUDIX domain
Image from the rcsb pdb (www.rcsb.org)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling