| Link type | Probability | Chain 2 piercings | Chain 4 piercings | Chain 5 piercings | Chain 6 piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
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Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
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Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
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Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
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Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
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Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
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Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
| view details |
|
Other | 23% | -3626 -3626 | -2482 -3622 -3305 -346 | +3332 -3572 +504 -894 +1184 -1504 +1634 -1884 +2224 -2364 +2634 -2834 | |||||||||
Chain 2 Sequence |
PKKPKEPVQVPKLVIKGGIEVLGVKTGVDSFTEVECFLNPQMGNPDEHQKGLSKSLAAEKQFTDDSPDKEQLPCYSVARIPLPNINEDLTCGNILMWEAVTVKTEVIGVTAMLNLHSGTQKTHENGAGKPIQGSNFHFFAVGGEPLELQGVLANYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPDPSKNENTRYFGTYTGGENVPPVLHITNTATTVLLDEQGVGPLCKADSLYVSAVDICGLFTNTSGTQQWKGLPRYFKITLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMIGMSSQVEEVRVYEDTEELPGDPDMIRYIDEFGQTTTRMQ |
Chain 2 Sequence |
APKKPKEPVQVPKLVIKGGIEVLGVKTGVDSFTEVECFLNPQMGNPDEHQKGLSKSLAAEKQFTDDSPDKEQLPCYSVARIPLPNINEDLTCGNILMWEAVTVKTEVIGVTAMLNLHSGTQKTHENGAGKPIQGSNFHFFAVGGEPLELQGVLANYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPDPSKNENTRYFGTYTGGENVPPVLHITNTATTVLLDEQGVGPLCKADSLYVSAVDICGLFTNTSGTQQWKGLPRYFKITLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMIGMSSQVEEVRVYEDTEELPGD |
Chain 2 Sequence |
KKPKEPVQVPKLVIKGGIEVLGVKTGVDSFTEVECFLNPQMGNPDEHQKGLSKSLAAEKQFTDDSPDKEQLPCYSVARIPLPNINEDLTCGNILMWEAVTVKTEVIGVTAMLNLHSGTQKTHENGAGKPIQGSNFHFFAVGGEPLELQGVLANYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPDPSKNENTRYFGTYTGGENVPPVLHITNTATTVLLDEQGVGPLCKADSLYVSAVDICGLFTNTSGTQQWKGLPRYFKITLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMIGMSSQVEEVRVYEDTEELPGDPDMIRYIDEFGQTTTRMQ |
Chain 2 Sequence |
KKPKEPVQVPKLVIKGGIEVLGVKTGVDSFTEVECFLNPQMGNPDEHQKGLSKSLAAEKQFTDDSPDKEQLPCYSVARIPLPNINEDLTCGNILMWEAVTVKTEVIGVTAMLNLHSGTQKTHENGAGKPIQGSNFHFFAVGGEPLELQGVLANYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPDPSKNENTRYFGTYTGGENVPPVLHITNTATTVLLDEQGVGPLCKADSLYVSAVDICGLFTNTSGTQQWKGLPRYFKITLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMIGMSSQVEEVRVYEDTEELPGDPDMIRYIDEFGQ |
| sequence length | 348,331,347,341 |
| structure length | 348,331,347,341 |
| publication title |
The structure of simian virus 40 refined at 3.1 A resolution.
pubmed doi rcsb |
| molecule tags | Virus |
| molecule keywords | SIMIAN VIRUS 40 |
| pdb deposition date | 1995-11-27 |
| LinkProt deposition date | 2016-10-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| 2456 | PF00718 | Polyoma_coat | Polyomavirus coat protein |
| 2456 | PF00718 | Polyoma_coat | Polyomavirus coat protein |
| 2456 | PF00718 | Polyoma_coat | Polyomavirus coat protein |
| 2456 | PF00718 | Polyoma_coat | Polyomavirus coat protein |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Polyomavirus Vp1; Chain A | Polyomavirus Vp1, chain A | ||
| Mainly Beta | Sandwich | Polyomavirus Vp1; Chain A | Polyomavirus Vp1, chain A | ||
| Mainly Beta | Sandwich | Polyomavirus Vp1; Chain A | Polyomavirus Vp1, chain A | ||
| Mainly Beta | Sandwich | Polyomavirus Vp1; Chain A | Polyomavirus Vp1, chain A |
#chains in the LinkProt database with same CATH superfamily 1SVA 145; 1SVA 1346; 1SVA 24; 1SVA 146; 1SVA 456; 1SVA 3456; 1SVA 345; 1SVA 2345; 1SVA 135; 1SVA 46; 1SVA 1236; 1SVA 2346; 1SVA 236; 1SVA 1345; 1SVA 23; 1SVA 1256; 1SVA 45; 1SVA 26; 1SVA 136; 1SVA 1235; 1SVA 156; 1SVA 235; 1SVA 2456; 1SVA 1234; 1SVA 25; 1SVA 1356; 1SVA 234; 1SVA 346; 1SVA 256; 1SVA 134; #chains in the LinkProt database with same CATH topology 1SVA 145; 1SVA 1346; 1SVA 24; 1SVA 146; 1SVA 456; 1SVA 3456; 1SVA 345; 1SVA 2345; 1SVA 135; 1SVA 46; 1SVA 1236; 1SVA 2346; 1SVA 236; 1SVA 1345; 1SVA 23; 1SVA 1256; 1SVA 45; 1SVA 26; 1SVA 136; 1SVA 1235; 1SVA 156; 1SVA 235; 1SVA 2456; 1SVA 1234; 1SVA 25; 1SVA 1356; 1SVA 234; 1SVA 346; 1SVA 256; 1SVA 134; #chains in the LinkProt database with same CATH homology 1SVA 145; 1SVA 1346; 1SVA 24; 1SVA 146; 1SVA 456; 1SVA 3456; 1SVA 345; 1SVA 2345; 1SVA 135; 1SVA 46; 1SVA 1236; 1SVA 2346; 1SVA 236; 1SVA 1345; 1SVA 23; 1SVA 1256; 1SVA 45; 1SVA 26; 1SVA 136; 1SVA 1235; 1SVA 156; 1SVA 235; 1SVA 2456; 1SVA 1234; 1SVA 25; 1SVA 1356; 1SVA 234; 1SVA 346; 1SVA 256; 1SVA 134;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
