| Link type | Probability | Chain B piercings | Chain C piercings | Chain D piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Unlink | 27% | +262C -424C | ||||||||||
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Unlink | 27% | +262C -424C | ||||||||||
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Unlink | 27% | +262C -424C | ||||||||||
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Unlink | 27% | +262C -424C | ||||||||||
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Unlink | 27% | +262C -424C | ||||||||||
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Unlink | 27% | +262C -424C | ||||||||||
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Unlink | 27% | +262C -424C | ||||||||||
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Unlink | 27% | +262C -424C | ||||||||||
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
| view details |
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Unlink | 27% | +262C -424C | ||||||||||
Chain B Sequence |
PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFES-----KGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKR---------THQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI |
Chain B Sequence |
PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFES-------NSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTG----NKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQ-------SIRYPAWNGIISQEVLDYLSSYINRRI |
Chain B Sequence |
PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFES--------SHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTG--SSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQ-------SIRYPAWNGIISQEVLDYLSSYINRRI |
| sequence length | 422,422,422 |
| structure length | 408,404,405 |
| publication title |
Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swapping.
pubmed doi rcsb |
| molecule tags | Ligase, lyase/dna |
| molecule keywords | SYMMETRIZED FRT DNA SITES |
| source organism | Saccharomyces cerevisiae |
| missing residues | B: 129-135,334-344 C: 129-137,263-268,389-397 D: 129-138,263-266,389-397 |
| pdb deposition date | 2000-08-14 |
| LinkProt deposition date | 2016-10-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| BCD | PF03930 | Flp_N | Recombinase Flp protein N-terminus |
| BCD | PF05202 | Flp_C | Recombinase Flp protein |
| BCD | PF03930 | Flp_N | Recombinase Flp protein N-terminus |
| BCD | PF05202 | Flp_C | Recombinase Flp protein |
| BCD | PF03930 | Flp_N | Recombinase Flp protein N-terminus |
| BCD | PF05202 | Flp_C | Recombinase Flp protein |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | hpI Integrase; Chain A | Intergrase catalytic core | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) | ||
| Mainly Alpha | Orthogonal Bundle | hpI Integrase; Chain A | Intergrase catalytic core | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) | ||
| Mainly Alpha | Orthogonal Bundle | hpI Integrase; Chain A | Intergrase catalytic core | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) |
#chains in the LinkProt database with same CATH superfamily 1FLO BD; 1FLO ABC; 1FLO AC; 1FLO ABCD; 1FLO AD; 1FLO ABD; 1FLO BC; 1FLO BCD; 1FLO ACD; #chains in the LinkProt database with same CATH topology 1QWI ABC; 1FLO BD; 1FLO ABC; 1QWI BD; 1QWI CD; 1FLO AC; 1FLO ABCD; 1QWI ACD; 1FLO AD; 1QWI AC; 1FLO ABD; 1QWI BCD; 1FLO BC; 1QWI AB; 1QWI ABCD; 1QWI ABD; 1FLO BCD; 1QWI BC; 1FLO ACD; #chains in the LinkProt database with same CATH homology 1FLO BD; 1FLO ABC; 1FLO AC; 1FLO ABCD; 1FLO AD; 1FLO ABD; 1FLO BC; 1FLO BCD; 1FLO ACD;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
