1ARQAB

Relaxation matrix refinement of the solution structure of the arc repressor
Link type Probability Chain A piercings Chain B piercings
view details
Hopf.2 Hopf.2 55% -14B -54A
view details
Hopf.2 Hopf.2 55% -14B -54A
view details
Hopf.2 Hopf.2 55% -14B -54A
view details
Hopf.2 Hopf.2 55% -14B -54A
view details
Hopf.2 Hopf.2 55% -14B -54A
view details
Hopf.2 Hopf.2 55% -14B -54A
view details
Hopf.2 Hopf.2 55% -14B -54A
Interpreting sequences
Chain A Sequence
MKGMSKMPQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA
Chain A Sequence
MKGMSKMPQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA
sequence length 53,53
structure length 53,53
publication title Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations.
pubmed doi rcsb
molecule tags Gene-regulating protein
molecule keywords ARC REPRESSOR
source organism Enterobacteria phage p22
pdb deposition date1993-08-24
LinkProt deposition date2016-08-17

pfam database annotations

chain Pfam Accession CodePfam Family IdentifierPfam Description
AB PF03869 ArcArc-like DNA binding domain
AB PF03869 ArcArc-like DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 1arqA00
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 1arqB00
1ARRAB 3FMTBEF 3FMTABF 3FMTEF 3FMTABE 3FMTAB 1ARQAB 3FMTAEF
chains in the LinkProt database with same CATH superfamily
1ARRAB 3FMTBEF 3FMTABF 3FMTEF 3FMTABE 3FMTAB 1ARQAB 3FMTAEF
chains in the LinkProt database with same CATH topology
1ARRAB 3FMTBEF 3FMTABF 3FMTEF 3FMTABE 3FMTAB 1ARQAB 3FMTAEF
chains in the LinkProt database with same CATH homology


 
#chains in the LinkProt database with same CATH superfamily
 1ARR AB;  3FMT BEF;  3FMT ABF;  3FMT EF;  3FMT ABE;  3FMT AB;  1ARQ AB;  3FMT AEF; 
#chains in the LinkProt database with same CATH topology
 1ARR AB;  3FMT BEF;  3FMT ABF;  3FMT EF;  3FMT ABE;  3FMT AB;  1ARQ AB;  3FMT AEF; 
#chains in the LinkProt database with same CATH homology
 1ARR AB;  3FMT BEF;  3FMT ABF;  3FMT EF;  3FMT ABE;  3FMT AB;  1ARQ AB;  3FMT AEF; 
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#similar chains in the LinkProt database (?% sequence similarity)
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#similar chains, but unlinked
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#similar chains in the pdb database (?% sequence similarity)
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LinkProt | Interdisciplinary Laboratory of Biological Systems Modelling