| Link type | Probability | Chain B piercings | Chain C piercings | Chain D piercings | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
| view details |
|
Hopf.2 U Ring | 32% | -178B -180C | ||||||||||
Chain B Sequence |
KITGLLDGDRVIVFDKNGISKLSARHYGNVEGNFLSLSLVEALYLINLGWLEVKYKDNKPLSFEELYEYARNVEERLCLKYLVYKDLRTRGYIVKTGLKYGADFRLYERGANIDKEHSVYLVKVFPEDSSFLLSELTGFVRVAHSVRKKLLIAIVDADGDIVYYNMTYVKP |
Chain B Sequence |
KITGLLDGDRVIVFDKNGISKLSARHYGNVEGNFLSLSLVEALYLINLGWLEVKYKDNKPLSFEELYEYARNVEERLCLKYLVYKDLRTRGYIVKTGLKYGADFRLYERGANIDKEHSVYLVKVFPEDSSFLLSELTGFVRVAHSVRKKLLIAIVDADGDIVYYNMTYVKP |
Chain B Sequence |
KITGLLDGDRVIVFDKNGISKLSARHYGNVEGNFLSLSLVEALYLINLGWLEVKYKDNKPLSFEELYEYARNVEERLCLKYLVYKDLRTRGYIVKTGLKYGADFRLYERGANIDKEHSVYLVKVFPEDSSFLLSELTGFVRVAHSVRKKLLIAIVDADGDIVYYNMTYVKP |
| sequence length | 171,171,171 |
| structure length | 171,171,171 |
| publication title |
Crystal structure and evolution of a transfer RNA splicing enzyme.
pubmed doi rcsb |
| molecule tags | Endonuclease |
| molecule keywords | TRNA ENDONUCLEASE |
| source organism | Methanocaldococcus jannaschii |
| ec nomenclature |
ec 4.6.1.16: tRNA-intron lyase. ec 4.6.1.16: tRNA-intron lyase. ec 4.6.1.16: tRNA-intron lyase. |
| pdb deposition date | 1998-03-23 |
| LinkProt deposition date | 2016-08-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| BCD | PF01974 | tRNA_int_endo | tRNA intron endonuclease, catalytic C-terminal domain |
| BCD | PF02778 | tRNA_int_endo_N | tRNA intron endonuclease, N-terminal domain |
| BCD | PF01974 | tRNA_int_endo | tRNA intron endonuclease, catalytic C-terminal domain |
| BCD | PF02778 | tRNA_int_endo_N | tRNA intron endonuclease, N-terminal domain |
| BCD | PF01974 | tRNA_int_endo | tRNA intron endonuclease, catalytic C-terminal domain |
| BCD | PF02778 | tRNA_int_endo_N | tRNA intron endonuclease, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | MutS, DNA mismatch repair protein, domain I | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease; Chain: A, domain 1 | Trna Endonuclease; Chain: A, domain 1 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | MutS, DNA mismatch repair protein, domain I | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease; Chain: A, domain 1 | Trna Endonuclease; Chain: A, domain 1 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | MutS, DNA mismatch repair protein, domain I | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease; Chain: A, domain 1 | Trna Endonuclease; Chain: A, domain 1 |
#chains in the LinkProt database with same CATH superfamily 1A79 CD; 1A79 AB; 1A79 BC; 1A79 AC; 1A79 BCD; 1A79 ABC; 1A79 ABD; 1A79 ACD; #chains in the LinkProt database with same CATH topology 1A79 CD; 1A79 AB; 1A79 BC; 1A79 AC; 1A79 BCD; 1A79 ABC; 1A79 ABD; 1A79 ACD; #chains in the LinkProt database with same CATH homology 1A79 CD; 1A79 AB; 1A79 BC; 1A79 AC; 1A79 BCD; 1A79 ABC; 1A79 ABD; 1A79 ACD;
#similar chains in the LinkProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unlinked ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
